 Research articleDeep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methodsMalali Gowda1* 1 Department of Plant Pathology, Ohio State University, Columbus, OH 43210, USA 2 Department of Plant and Soil Sciences, University of Delaware, DE 19711, USA 3 Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA 4 Ohio Supercomputer Center, The Ohio State University, Columbus, OH 43210, USA 5 Agilent Technologies Inc, Little Falls Site, 2850 Centerville Road, Delaware 19711, USA 6 Solexa, Inc. 25861 Industrial Blvd, Hayward, CA, 94545, USA 7 Fungal Genomics Laboratory, Department of Plant Pathology, North Carolina State University, Raleigh, NC 27606, USA 8 Department of Biological Science, Myongji University, Kyonggido, 449728, Korea
BMC Genomics 2006, 7:310doi:10.1186/1471-2164-7-310
Additional filesAdditional file 1: Appressorial and mycelial MPSS tags, microarray up/down regulated genes and KOG analysis results Format: XLS Size: 6.3MB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 2: Novel appressorial and mycelial MPSS and RL-SAGE tags. Format: XLS Size: 2.1MB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 3: Alternative sense and antisense transcript tags for selected genes. Format: DOC Size: 63KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 4: Antisense transcript tags for annotated genes. Format: XLS Size: 715KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 5: Annotated genes with sense and antisense tags specifically and commonly present in mycelia and appressoria. Format: XLS Size: 113KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 6: List of alternative transcript tags from MPSS and EST. Format: XLS Size: 104KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 7: Alternative tags for selected genes in appressoria and mycelia identified by MPSS. Format: DOC Size: 147KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 8: Common alternative tags detected by RL-SAGE and MPSS. Format: XLS Size: 863KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 9: List of top 20 highly and specifically up regulated and down regulated genes in appressoria and in mycelia of M. grisea detected by oligoarray and MPSS. Format: XLS Size: 29KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 10: The up-regulated genes (4,649) in appressoria identified by oligoarray analysis were subjected for KOGs analysis based on the putative function in the KOGs protein database. Functional classification and percentage of genes represented in appressorial tissue is shown. Format: PPT Size: 41KB Download file This file can be viewed with: Microsoft PowerPoint Viewer Additional file 11: The up-regulated genes (3,784) in mycelia identified by oligoarray analysis were subjected for KOGs analysis based on the putative function in the KOGs protein database. Functional classification and percentage of genes represented in mycelia tissue is shown. Format: PPT Size: 41KB Download file This file can be viewed with: Microsoft PowerPoint Viewer |
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