Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus

doi:10.1186/1471-2164-7-298

BMC Genomics

Volume 7

Viewing options:

Abstract
Full text
PDF (468KB)
Additional files

Associated material:

Related literature:

Articles citing this article
on BioMed Central
on Google Scholar
on ISI Web of Science
on PubMed Central
Other articles by authors
on Google Scholar

Lee MA
Keane OM
Glass BC
Manley TR
Cullen NG
Dodds KG
McCulloch AF
Morris CA
Schreiber M
Warren J
Zadissa A
Wilson T
McEwan JC

on PubMed

Lee MA
Keane OM
Glass BC
Manley TR
Cullen NG
Dodds KG
McCulloch AF
Morris CA
Schreiber M
Warren J
Zadissa A
Wilson T
McEwan JC
Related articles/pages
on Google

on Google Scholar

on PubMed

Tools:

Post to:

Research article

Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus

Michael A Lee¹^,4 , Orla M Keane² , Belinda C Glass¹ , Tim R Manley¹ , Neil G Cullen³ , Ken G Dodds¹ , Alan F McCulloch¹ , Chris A Morris³ , Mark Schreiber¹^,5 , Jonathan Warren¹ , Amonida Zadissa² , Theresa Wilson² and John C McEwan¹

¹AgResearch, Invermay Agricultural Centre, Mosgiel, Private Bag 50034, New Zealand

²AgResearch, Molecular Biology Unit, Department of Biochemistry, University of Otago, Dunedin, New Zealand

³AgResearch, Ruakura Research Centre, PB3123, Hamilton, New Zealand

⁴Heron Evidence Development Ltd, The Spirella Building, Letchworth Garden City, SG6 4ET, UK

⁵Novartis Institute for Tropical Diseases, 10 Biopolis Rd, #05-01 Chromos, 138670, Singapore

author email corresponding author email

BMC Genomics 2006, 7:298doi:10.1186/1471-2164-7-298


Published:	26 November 2006

Additional files

Additional File 1:

Text file containing the FASTA sequence of all contigs containing SNPs with the SNP noted.

Format: ZIP Size: 4MB Download file

Additional File 2:

Excel spreadsheet listing all putative SNPs and their properties.

Format: XLS Size: 3.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

Excel spreadsheets listing all putative synonymous and non-synonymous SNPs detected in the bovine sequences analysed.

Format: XLS Size: 1.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 4:

Excel spreadsheet listing all putative non-synonymous SNPs genotyped through the pools along with the primers used, assay conditions and allele calls.

Format: XLS Size: 451KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 5:

Word document of genotype means for SNP that had nominally significant associations with facial eczema resistance.

Format: DOC Size: 58KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 6:

Word document listing the cDNA libraries generated and their source tissue.

Format: DOC Size: 68KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 7:

Excel spreadsheet listing all non-synonymous SNPs genotyped through resource animals and assay conditions.

Format: XLS Size: 33KB Download file

This file can be viewed with: Microsoft Excel Viewer