|
Features of the huntingtin 3'UTRs of Ciona intestinalis mRNA and source supporting the data. |
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| N° |
3'UTR (nt) |
PolyA signal |
N° clones/total |
EST tissues |
||
|
|
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| Sequence |
Position |
3'RACE |
EST |
|||
|
|
||||||
| 1 |
37 |
AAUAcA |
-15 |
1/23 |
||
| 2 |
118 |
- |
1/23 |
|||
| 3 |
283 |
AAUcAA |
-44 |
1/23 |
||
| 4 |
323 |
AcUAAA |
-15 |
2/23 |
||
| 5 |
370 |
AAUAcA |
-17 |
15/23 |
4/6 |
h, g, b, cl |
| 6 |
496 |
- |
0/23 |
2/6 |
eg, tb |
|
| 7 |
744 |
AAgAAA |
-18 |
2/23 |
||
| 8 |
1018 |
AAUAAA |
-10 |
1/23 |
||
|
Lower case letters in the polyadenylation signal indicate differences from the canonical AAUAAA sequence. The position is the distance of the last base of the hexamer from the polyA start site, indicated as position 0. Tissue abbreviations: b: blood cells; cl: cleavage stage embryo; eg: egg; g: gonad; h: heart; tb: tailbud embryo. EST clones are detailed in 3. | ||||||
Gissi et al. BMC Genomics 2006 7:288 doi:10.1186/1471-2164-7-288 |
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