454 sequencing put to the test using the complex genome of barley
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* Corresponding author: Nils Stein stein@ipk-gatersleben.de
BMC Genomics 2006, 7:275 doi:10.1186/1471-2164-7-275
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BioMed Central: 18 citations
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Sequencing of BAC pools by different next generation sequencing platforms and strategies Stefan Taudien, Burkhard Steuernagel, Ruvini Ariyadasa, Daniela Schulte, Thomas Schmutzer, Marco Groth, Marius Felder, Andreas Petzold, Uwe Scholz, Klaus FX Mayer, Nils Stein, Matthias Platzer BMC Research Notes 2011, 4:411 (14 October 2011) |
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Kankshita Swaminathan, Magdy S Alabady, Kranthi Varala, Emanuele De Paoli, Isaac Ho, Dan S Rokhsar, Aru K Arumuganathan, Ray Ming, Pamela J Green, Blake C Meyers, Stephen P Moose, Matthew E Hudson Genome Biology 2010, 11:R12 (3 February 2010) Genomic data together with sequencing of tissue specific small RNA libraries reveals insights into the genome content, small RNA repertoire and evolutionary origins of the grass |
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Sithichoke Tangphatsornruang, Prakit Somta, Pichahpuk Uthaipaisanwong, Juntima Chanprasert, Duangjai Sangsrakru, Worapa Seehalak, Warunee Sommanas, Somvong Tragoonrung, Peerasak Srinives BMC Plant Biology 2009, 9:137 (24 November 2009) |
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Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing Wei Wang, Yejun Wang, Qing Zhang, Yan Qi, Dianjing Guo BMC Genomics 2009, 10:465 (9 October 2009) |
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Methodology article
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing Julio C Vega-Arreguín, Enrique Ibarra-Laclette, Beatriz Jiménez-Moraila, Octavio Martínez, Jean Vielle-Calzada, Luis Herrera-Estrella, Alfredo Herrera-Estrella BMC Genomics 2009, 10:299 (6 July 2009) |
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Matthew C Hale, Cory R McCormick, James R Jackson, J Andrew DeWoody BMC Genomics 2009, 10:203 (29 April 2009) |
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Jin Hee Shin, Kyujung Van, Dong Hyun Kim, Kyung Do Kim, Young Eun Jang, Beom-Soon Choi, Moon Young Kim, Suk-Ha Lee BMC Plant Biology 2008, 8:133 (23 December 2008) |
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High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies Jean-Marc Aury, Corinne Cruaud, Valérie Barbe, Odile Rogier, Sophie Mangenot, Gaelle Samson, Julie Poulain, Véronique Anthouard, Claude Scarpelli, François Artiguenave, Patrick Wincker BMC Genomics 2008, 9:603 (16 December 2008) By combining 454 GSFLX and Solexa-Illumina technologies to sequence medically important microbes, quality is maintained while lowering the cost and time taken to sequence whole genomes.
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Research article
Thomas Wicker, Apurva Narechania, Francois Sabot, Joshua Stein, Giang TH Vu, Andreas Graner, Doreen Ware, Nils Stein BMC Genomics 2008, 9:518 (31 October 2008) |
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Research article
Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome Nicole L Quinn, Natasha Levenkova, William Chow, Pascal Bouffard, Keith A Boroevich, James R Knight, Thomas P Jarvie, Krzysztof P Lubieniecki, Brian A Desany, Ben F Koop, Timothy T Harkins, William S Davidson BMC Genomics 2008, 9:404 (28 August 2008) |
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Aaron R Jex, Min Hu, D Timothy J Littlewood, Andrea Waeschenbach, Robin B Gasser BMC Genomics 2008, 9:11 (11 January 2008) |
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Ian Armstead, Lin Huang, Julie King, Helen Ougham, Howard Thomas, Ian King BMC Genomics 2007, 8:283 (20 August 2007) |
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Research
Accuracy and quality of massively parallel DNA pyrosequencing Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David Welch Genome Biology 2007, 8:R143 (20 July 2007) Error rates were estimated for the Roche GS20 massively parallel pyrosequencing system, and several factors were identified that can be used to remove low-quality reads, improving the accuracy to 99.75% or better. |