Table 4

Primer sequences and PCR conditions

Gene
Primer sequences
Ta (C°)
Cycles

GAPDH
F: 5'-caccaccatggagaaggctgg-3' R: 5'-ccaaagttgtcatggatgacc-3'
65
30
COL3A1
F: 5'-agcctccaactgctccta-3' R: 5'-gtccgggtctacctgatt-3'
56
30
ENO2
F: 5'-gtctgctgctcaaggtcaac-3' R: 5'-tccaggcaagcagaggaatc-3'
54
30
FGF18
F: 5'-cttcctgctgctgtgcttcc-3' R: 5'-cactccttgctggtgccatc-3'
57
30
JUN
F: 5'-gctatctaggtggagttg-3' R: 5'-gcacatgccacttgatac-3'
46
30
LHX2
F: 5'-tgaaggacagcctggtctac-3' R: 5'-gagctgcttcaagtccttgg-3'
56
30
MEIS1
F: 5'-gctgttccagcatctaacac-3' R: 5'-tgttgctgaccgtccattac-3'
50
30
MEIS2
F: 5'-gatcacgccgttatgttgcc-3' R: 5'-gctggagttcgagtgatgag-3'
49
30
PBX3
F: 5'-caggaagcaggacatcgg-3' R: 5'-ttggctctgtaatctgagtgtt-3'
56
30
PDGFRL
F: 5'-gtggagctaccctgcgtatc-3' R: 5'-ctgggagaaggtacaaagagttc-3'
60
35
PRICKLE1
F: 5'-aggtacggtattgccagtctt-3' R: 5'-cgaacactgcaacttcacctc-3'
60
35
SAT
F: 5'-tcactcgccgaggttccttg-3' R: 5'-acagcagcactcctcactcc-3'
53
30
SHB
F: 5'-gtttaatggcaacgagaagcg-3' R: 5'-tcctcacagccacgggatag-3'
60
35
TIMP2
F: 5'-ggaaacgacatttatggcaacc-3' R: 5'-acccagtccatccagaggc-3'
60
30
TLX1
F: 5'-acctcactggcctcaccttc-3' R: 5'-cagaccacggctgcagattc-3'
57
30
TOP1
F: 5'-gaaggaacagctagcagatg-3' R: 5'-agaactctgcctcttgagac-3'
50
30
UACA
F: 5'-cactgaatgacacgttagcca-3' R: 5'-atcctgcacctttctcatgct-3'
60
35

Ta, annealing temperature.

Crijns et al. BMC Genomics 2006 7:232   doi:10.1186/1471-2164-7-232