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Comparison of the main Gene Ontology categories among the gene lists |
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| Gene Ontology: Level 3 |
A2780 vs. CP70 + C30 + C200 |
CP70 vs. C30 + C200 |
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| N° Genes (%)1 |
N° Genes (%)2 |
P |
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| Biological Process |
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| Cellular physiological process |
60 (81) |
39 (78) |
0.82 |
| Metabolism |
43 (58) |
29 (58) |
1 |
| Regulation of cellular process |
24 (32) |
15 (30) |
0.85 |
| Organismal physiological process |
23 (31) |
10 (20) |
0.22 |
| Regulation of physiological process |
22 (30) |
16 (32) |
0.84 |
| Cell communication |
20 (27) |
13 (26) |
1 |
| Localization |
18 (24) |
10 (20) |
0.66 |
| Response to stress |
13 (18) |
5 (10) |
0.30 |
| Response to biotic stimulus |
10 (14) |
5 (10) |
0.78 |
| Cell adhesion |
10 (14) |
3 (6) |
0.36 |
| Negative regulation of biological process |
9 (12) |
5 (10) |
0.78 |
| Response to external stimulus |
9 (12) |
3 (6) |
0.36 |
| Morphogenesis |
7 (9) |
3 (6) |
0.73 |
| Organ development |
6 (8) |
5 (10) |
0.75 |
| Molecular Function |
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| Protein binding |
33 (40) |
24 (40) |
1 |
| Ion binding |
27 (33) |
15 (25) |
0.35 |
| Nucleic acid binding |
18 (22) |
12 (20) |
0.84 |
| Transferase activity |
14 (17) |
3 (5) |
0.04 (1)3 |
| Transcription factor activity |
8 (10) |
3 (5) |
0.36 |
| Receptor activity |
7 (9) |
11 (18) |
0.12 |
| Nucleotide binding |
7 (9) |
4 (7) |
0.76 |
| Hydrolase activity |
6 (7) |
9 (15) |
0.17 |
| Enzyme inhibitor activity |
6 (7) |
4 (7) |
1 |
| Receptor binding |
5 (6) |
5 (8) |
0.74 |
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1 74 genes with Gene Ontology annotation for biological process and 82 for molecular function; 2 50 genes with Gene Ontology annotation for biological process and 60 for molecular function; 3 FDR adjusted p-value. | |||
Crijns et al. BMC Genomics 2006 7:232 doi:10.1186/1471-2164-7-232 |
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