|
Class A: Genes under Rel-dependent stringent control |
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| Locus taga |
ratio |
gene name |
Annotation |
COG classb |
|
|
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| Genes under Rel-dependent, negative stringent control |
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|
|
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| cg0104 |
0.63 |
codA |
creatinine deaminase |
FR |
| cg0113 |
0.66 |
ureA |
urease (γ subunit) |
E |
| cg0229 |
0.33 |
gltB |
glutamine 2-oxoglutarate aminotransferase large subunit |
E |
| cg0291 |
0.62 |
3,4-dioxygenase beta subunit |
Q |
|
| cg0419 |
0.59 |
glycosyltransferase |
M |
|
| cg0599 |
0.58 |
rpsS |
30S ribosomal protein S19 |
J |
| cg0637 |
0.55 |
betB |
betaine aldehyde dehydrogenase oxireductase |
C |
| cg0990 |
0.65 |
rpmG |
50S ribosomal protein L33 |
J |
| cg1062 |
0.43 |
urtB |
ABC-type urea transport system, permease component |
E |
| cg1064 |
0.65 |
urtC |
ABC-type urea transport system, permease component |
E |
| cg1341 |
0.62 |
narI |
respiratory nitrate reductase 2 (γ chain) |
C |
| cg1342 |
0.64 |
narJ |
nitrate reductase (Δ chain) |
C |
| cg1606 |
0.62 |
pyrG |
CTP synthetase |
F |
| cg1607 |
0.66 |
NTP pyrophosphohydrolase |
LR |
|
| cg1783 |
0.29 |
soxA' |
sarcosine oxidase, N-terminal fragment |
E |
| cg1784 |
0.50 |
ocd |
ornithine cyclodeaminase |
E |
| cg1785 |
0.33 |
amt |
high-affinity ammonia permease |
P |
| cg2260 |
0.27 |
glnK |
Nitrogen regulatory protein PII |
E |
| cg2280 |
0.39 |
gdh |
NADP-specific glutamate dehydrogenase |
E |
| cg2429 |
0.52 |
glnA |
glutamine synthetase I |
E |
| cg2942 |
0.48 |
Bacterial regulatory proteins, AsnC family |
K |
|
| cg3308 |
0.65 |
rpsF |
30S ribosomal protein S6 |
J |
| cg3370 |
0.58 |
NADH-dependent flavin oxidoreductase |
C |
|
|
|
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| Genes under Rel-dependent, positive stringent control |
||||
|
|
||||
| cg0414 |
1.66 |
wzz |
cell surface polysaccharide biosynthesis protein |
D |
| cg0552 |
1.60 |
menD |
2-oxoglutarate decarboxylase |
H |
| cg0834 |
1.58 |
Bacterial extracellular solute-binding protein |
G |
|
| cg0924 |
3.24 |
ABC-type cobalamin/Fe3+-siderophores transport system |
P |
|
| cg0926 |
1.87 |
ABC-type cobalamin/Fe3+-siderophores transport system |
P |
|
| cg0928 |
1.64 |
ABC-type cobalamin/Fe3+-siderophores transport system |
P |
|
| cg1873 |
1.69 |
tesB2 |
acyl-CoA thioesterase II |
I |
| cg2102 |
1.79 |
sigB |
RNA polymerase sigma factor |
K |
| cg2114 |
1.59 |
lexA |
LexA repressor transcriptional regulator |
KT |
| cg2120 |
1.53 |
ptsF |
PTS system, fructose/mannitol-specific enzyme II |
G |
| cg2291 |
1.53 |
pyk |
pyruvate kinase |
G |
| cg2398 |
1.55 |
plsC |
1-acyl-SN-glycerol-3-phosphate acetyltransferase |
I |
| cg2403 |
2.61 |
qcrB |
cytochrome B |
C |
| cg2405 |
1.69 |
qcrC |
cytochrome C1 |
C |
| cg2406 |
1.63 |
ctaE |
cytochrome C, oxidase subunit 3 |
C |
| cg2459 |
1.53 |
ptpA |
protein-tyrosine phosphatase |
T |
| cg2645 |
1.82 |
clpP1 |
ATP-dependent Clp protease, proteolytic subunit ClpP1 |
OU |
| cg2963 |
2.09 |
clpC |
ATP-dependent Clp protease ATPase subunit |
O |
| cg3219 |
1.77 |
ldh |
L-lactate dehydrogenase |
C |
|
a Locus tag according to [50] b COG class according to [11] | ||||
Brockmann-Gretza and Kalinowski BMC Genomics 2006 7:230 doi:10.1186/1471-2164-7-230 |
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