BMC Genomics

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AgBase: a functional genomics resource for agriculture

Fiona M McCarthy*, Nan Wang, G Bryce Magee, Bindu Nanduri, Mark L Lawrence, Evelyn B Camon, Daniel G Barrell, David P Hill, Mary E Dolan, W Paul Williams, Dawn S Luthe, Susan M Bridges and Shane C Burgess

BMC Genomics 2006, 7:229 doi:10.1186/1471-2164-7-229

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Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)

Prabin Bajgain, Bryce A Richardson, Jared C Price, Richard C Cronn, Joshua A Udall BMC Genomics 2011, 12:370 (18 July 2011)

Proceedings   Open Access

GOModeler- A tool for hypothesis-testing of functional genomics datasets

Prashanti Manda, McKinley G Freeman, Susan M Bridges, TJ Jankun-Kelly, Bindu Nanduri, Fiona M McCarthy, Shane C Burgess BMC Bioinformatics 2010, 11(Suppl 6):S29 (7 October 2010)

Proceedings   Open Access

Integrated database for identifying candidate genes for Aspergillus flavus resistance in maize

Rowena Y Kelley, Cathy Gresham, Jonathan Harper, Susan M Bridges, Marilyn L Warburton, Leigh K Hawkins, Olga Pechanova, Bela Peethambaran, Tibor Pechan, Dawn S Luthe, J E Mylroie, Arunkanth Ankala, Seval Ozkan, W B Henry, W P Williams BMC Bioinformatics 2010, 11(Suppl 6):S25 (7 October 2010)

Proceedings   Open Access

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data

Bart Berg, Chamali Thanthiriwatte, Prashanti Manda, Susan M Bridges BMC Bioinformatics 2009, 10(Suppl 11):S9 (8 October 2009)

Proceedings   Open Access

Exploratory visual analysis of conserved domains on multiple sequence alignments

TJ Jankun-Kelly, Andrew D Lindeman, Susan M Bridges BMC Bioinformatics 2009, 10(Suppl 11):S7 (8 October 2009)

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Male reproductive development: gene expression profiling of maize anther and pollen ontogeny

Jiong Ma, David S Skibbe, John Fernandes, Virginia Walbot Genome Biology 2008, 9:R181 (19 December 2008)

Analysis of global gene expression profiles of seven stages of maize anther development reveals expression of many genes

Research article   Open Access

Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility

Divyaswetha Peddinti, Bindu Nanduri, Abdullah Kaya, Jean M Feugang, Shane C Burgess, Erdogan Memili BMC Systems Biology 2008, 2:19 (22 February 2008)

Research article   Open Access

Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome

Teresia J Buza, Fiona M McCarthy, Shane C Burgess BMC Genomics 2007, 8:425 (19 November 2007)