BMC Genomics
Volume 7

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Research article

Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa

Harshavardhan Doddapaneni^*¹ , Jiqiang Yao^*² , Hong Lin³ , M Andrew Walker¹ and Edwin L Civerolo³

¹University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA

²Citrus Research Board, 323 W. Oak, P.O. Box 230, Visalia, CA 93279, USA

³USDA-ARS. San Joaquin Valley Agricultural Science Center, 9611 So. Riverbend Ave. Parlier, CA 93648, USA

author email corresponding author email* Contributed equally

BMC Genomics 2006, 7:225doi:10.1186/1471-2164-7-225


Published:	1 September 2006

Additional files

Additional File 1:

Conserved unique gene sequences. List of X. fastidiosa conserved unique genes.

Format: XLS Size: 43KB Download file

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Additional file 2:

Pair wise analysis of conserved genes with internal INDELs that cause frame shifts. List of conserved genes causing frame shift mutations.

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Additional file 3:

Highly conserved genes. List of highly conserved genes among the four sequenced X. fastidiosa strains.

Format: XLS Size: 62KB Download file

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Additional file 4:

Unique gene clusters in strain 9a5c. List of gene clusters that are unique to strain 9a5c.

Format: XLS Size: 19KB Download file

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Additional file 5:

Unique gene clusters in strain Temecula-1. List on gene clusters that are unique to strain Temecula-1.

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Additional file 6:

Codon usage analysis. Codon usage analysis of the native and putative xenologues (marked by a colon before the gene name) for 9a5c (6), Ann1 (7) and Dixon (8) strains. Support trees were generated for the hierarchical clusters using the TMEV software with 1000 bootstrap samples.

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Additional file 7:

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Additional file 8:

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Additional file 9:

Relative neutrality plots. Relative neutrality plots for native and putative xenologues gene groups in the four X. fastidiosa strains. GC12 values are plotted as a function of the GC3 value and the slope of the correlation was determined.

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