|
The top 25 genes exhibiting decreased mRNA abundance 2 hours post activation. |
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| Clone |
E value |
Accession No. |
Gene Symbol |
Gene |
Fold Decrease |
FDRmax |
P value |
|
|
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| C0006018h16 |
0.0 |
NM_031483 |
ITCH |
Itchy homolog E3 ubiquitin protein ligase |
-5.36 |
2.55E-10 |
2.79E-12 |
| MARC_2BOV_14N13 |
e-151 |
XM_582744 |
IL16 |
Interleukin 16 |
-4.94 |
9.35E-10 |
1.41E-11 |
| C0006011p15 |
0.0 |
NM_003400 |
XPO1 |
Exportin 1 |
-4.11 |
3.28E-03 |
4.70E-04 |
| C0006011d04 |
e-112 |
NM_000199 |
SGSH |
N-sulfoglucosamine sulfohydrolase |
-4.05 |
4.14E-05 |
2.88E-06 |
| C0005202b11 |
0.0 |
NM_006565 |
CTCF |
CCCTC-binding factor |
-3.83 |
9.04E-06 |
4.90E-07 |
| C0006014p20 |
0.0 |
NM_005642 |
TAF7 |
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa |
-3.74 |
7.65E-09 |
1.61E-10 |
| MARC_1BOV_107K4 |
0.0 |
XM_584158 |
CCR2 |
Chemokine (C-C motif) receptor 2 |
-3.70 |
4.81E-06 |
2.40E-07 |
| C0005203a5 |
6.00E-54 |
NM_032804 |
C10orf22 |
Chromosome 10 open reading frame 22 |
-3.69 |
2.77E-04 |
2.68E-05 |
| C0006005d04 |
0.0 |
XM_588702 |
UNG |
Uracil-DNA glycosylase |
-3.62 |
4.24E-10 |
5.00E-12 |
| C0007385D18 |
0.0 |
BM087483 |
- |
EST |
-3.60 |
2.00E-03 |
2.63E-04 |
| C0006007o03 |
e-153 |
NM_016046 |
EXOSC1 |
Exosome component 1 |
-3.51 |
6.69E-07 |
2.57E-08 |
| C0006019m08 |
0.0 |
XM_868169 |
- |
Hypothetical protein LOC616204 |
-3.51 |
8.67E-06 |
4.67E-07 |
| C0005205c2 |
2.00E-70 |
NM_024939 |
RBM35B |
RNA binding motif protein 35B |
-3.50 |
7.22E-08 |
2.15E-09 |
| C0005207d22 |
0.0 |
NM_013444 |
UBQLN2 |
Ubiquilin 2 |
-3.48 |
1.36E-08 |
3.13E-10 |
| C0005198j2 |
7.00E-58 |
NM_139014 |
MAPK14 |
Mitogen-activated protein kinase 14 (p38) |
-3.41 |
1.36E-08 |
3.15E-10 |
| C0006005h08 |
0.0 |
NM_052911 |
ESCO1 |
Establishment of cohesion 1 homolog 1 |
-3.36 |
9.89E-06 |
5.48E-07 |
| C0005202l16 |
4.00E-42 |
XM_545369 |
C6orf32 |
Chromosome 6 open reading frame 32 |
-3.32 |
2.43E-10 |
2.61E-12 |
| MARC_2BOV_105E23 |
e-119 |
NM_153425 |
TRADD |
TNFRSF1A-associated via death domain |
-3.18 |
3.95E-07 |
1.45E-08 |
| C0006007o20 |
e-111 |
NM_001001806 |
ZFP36L2 |
Zinc finger protein 36, C3H type-like 2 |
-3.18 |
3.22E-09 |
5.75E-11 |
| C0005209h6 |
e-108 |
NM_006163 |
NFE2 |
Nuclear factor (erythroid-derived 2), 45kDa |
-3.13 |
3.40E-06 |
3.27E-07 |
| C0006019p19 |
e-106 |
XM_868699 |
TOB2 |
Transducer of ERBB2, 2 |
-3.13 |
8.37E-07 |
3.31E-08 |
| C0005202g13 |
0.0 |
AV594592 |
- |
EST |
-3.11 |
7.31E-04 |
8.25E-05 |
| C0005208j1 |
0.0 |
CB221804 |
- |
EST |
-3.10 |
6.65E-05 |
5.18E-06 |
| C0006012f10 |
1.00E-67 |
NM_145037 |
FAM55C |
Family with sequence similarity 55, member C |
-3.08 |
1.03E-11 |
6.98E-14 |
| C0005208h20 |
0.0 |
CB420023 |
- |
EST |
-3.01 |
1.67E-05 |
9.91E-07 |
|
Summary of the top 25 genes exhibiting decreased mRNA abundance 2 hours post activation, including clone name, accession number, e-value and identity of the best BLAST match and average fold change. The P and FDRmax values denote the probability from the moderated t-test and the Benjamini and Hochberg false discovery rate values respectively from the analysis of the resting cell values compared to the average activated sample values (Pre v Post). | |||||||
Jensen et al. BMC Genomics 2006 7:224 doi:10.1186/1471-2164-7-224 |
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