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The top 25 genes exhibiting increased mRNA abundance 2 hours post activation. |
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| Clone |
E value |
Accession No. |
Gene Symbol |
Gene |
Fold Increase |
FDRmax |
P value |
|
|
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| pIL8 |
0.0 |
NM_173925 |
IL8 |
Interleukin 8 |
40.00 |
1.23E-18 |
4.91E-22 |
| MARC_3BOV_60P17 |
0.0 |
NM_174299 |
CXCL2 |
Chemokine (C-X-C motif) ligand 2 (GROβ/MIP2A) |
38.20 |
1.25E-15 |
1.24E-18 |
| C0006019e20 |
0.0 |
NM_181015 |
PRNP |
Prion protein |
28.13 |
1.05E-20 |
2.08E-24 |
| MARC_1BOV_101M3 |
0.0 |
NM_174263 |
CCL20 |
Chemokine (C-C motif) ligand 20 (MIP3A) |
25.81 |
3.14E-10 |
3.56E-12 |
| MARC_1BOV_94L3 |
0.0 |
NM_174300 |
CXCL6 |
Chemokine (C-X-C motif) ligand 6 |
22.91 |
1.72E-11 |
1.23E-13 |
| C0005209b8 |
6.00E-72 |
XM_612426 |
CCRN4L |
CCR4 carbon catabolite repression 4-like |
20.49 |
1.64E-11 |
1.14E-13 |
| C0006018n14 |
0.0 |
NM_174006 |
CCL2 |
Chemokine (C-C motif) ligand 2 (MCP-1) |
19.45 |
1.32E-07 |
4.19E-09 |
| C0005204j16 |
0.0 |
XM_864683 |
CXCL3 |
Chemokine (C-X-C motif) ligand 3 (GROγ/MIP2b) |
18.16 |
1.20E-13 |
3.40E-16 |
| C0006020d11 |
0.0 |
XM_865242 |
ZFAND2A |
Zinc finger, AN1-type domain 2A |
17.61 |
1.10E-14 |
1.31E-17 |
| C0006011e13 |
e-179 |
CK976904 |
- |
EST |
16.71 |
3.10E-08 |
8.41E-10 |
| C0005208k22 |
e-167 |
NM_173198 |
NR4A3 |
Nuclear receptor subfamily 4, group A, member 3 |
15.65 |
2.39E-12 |
1.14E-14 |
| C0006020e20 |
0.0 |
CB419326 |
- |
EST |
14.07 |
9.10E-12 |
5.60E-14 |
| MARC_3BOV_36F6 |
0.0 |
NM_175827 |
CCL5 |
Chemokine (C-C motif) ligand 5 (RANTES) |
13.84 |
2.90E-12 |
1.47E-14 |
| C0006018g13 |
0.0 |
XM_611249 |
SLCO4A1 |
Solute carrier organic anion transporter family, member 4A1 |
13.79 |
4.62E-10 |
5.89E-12 |
| MARC_1BOV_72M12 |
0.0 |
XM_866821 |
CXCL10 |
Chemokine (C-X-C motif) ligand 10 (IP10) |
13.71 |
1.09E-05 |
6.09E-07 |
| C0005199c13 |
0.0 |
AY248754 |
TNFAIP3 |
TNF-alpha induced protein 3 |
13.48 |
2.34E-08 |
5.90E-10 |
| C0006015e11 |
0.0 |
XM_881561 |
PMAIP1 |
Phorbol-12-myristate-13-acetate-induced protein 1 |
12.99 |
1.95E-12 |
8.90E-15 |
| C0005202i8 |
0.0 |
XM_583725 |
APOBEC3A |
Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A |
12.96 |
1.20E-13 |
2.97E-16 |
| MARC_3BOV_120N21 |
0.0 |
NM_174028 |
CSF3 |
Colony stimulating factor 3 (granulocyte) (G-CSF) |
12.76 |
8.11E-11 |
7.73E-13 |
| C0006015n15 |
2.00E-69 |
NM_002748 |
MAPK6 |
Mitogen-activated protein kinase 6 (erk-3) |
12.64 |
8.88E-12 |
5.11E-14 |
| C0006016h15 |
0.0 |
XM_613370 |
RGS1 |
Regulator of G-protein signalling 1 |
12.59 |
5.10E-09 |
1.00E-10 |
| C0006013p15 |
e-158 |
CB534198 |
- |
EST |
12.59 |
1.93E-11 |
1.50E-13 |
| C0005202d9 |
0.0 |
XM_870158 |
ANKRD22 |
Ankyrin repeat domain 22 |
11.99 |
6.36E-17 |
3.79E-20 |
| MARC_1BOV_57B12 |
0.0 |
NM_174348 |
ICAM1 |
Intercellular adhesion molecule 1 (CD54) |
11.40 |
6.40E-10 |
9.15E-12 |
| C0005206b23 |
3.00E-82 |
NM_001432 |
EREG |
Epiregulin |
10.98 |
1.98E-07 |
6.61E-09 |
|
Summary of the top 25 genes exhibiting increased mRNA abundance 2 hours post activation, including clone name, accession number, e-value and identity of the best BLAST match and average fold change. The P and FDRmax values denote the probability from the moderated t-test and the Benjamini and Hochberg false discovery rate values respectively from the analysis of the resting cell values compared to the average activated sample values (Pre v Post). | |||||||
Jensen et al. BMC Genomics 2006 7:224 doi:10.1186/1471-2164-7-224 |
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