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Table 3
Taxa included in phylogenetic analyses with GenBank accession numbers and references
Taxon	GenBank Accession Numbers	Reference

Gymnosperm Outgroups
Pinus thunbergii	NC_001631	Wakasugi et al. 1994 [95]
Ginkgo biloba	DQ069337–DQ069702	Leebens-Mack et al. 2005 [49]
Basal Angiosperms
Amborella trichopoda	NC_005086	Goremykin et al. 2003 [47]
Nuphar advena	DQ069337–DQ069702	Leebens-Mack et al. 2005 [49]
Nymphaea alba	NC_006050	Goremykin et al. 2004 [48]
Magnoliids
Calycanthus floridus	NC_004993	Goremykin et al. 2003 [76]
Monocots
Acorus americanus	DQ069337–DQ069702	Leebens-Mack et al. 2005 [49]
Oryza sativa	NC_001320	Hiratsuka et al. 1989 [96]
Saccharum officinarum	NC_006084	Asano et al. 2004 [97]
Triticum aestivum	NC_002762	Ikeo and Ogihara, unpublished
Typha latifolia	DQ069337–DQ069702	Leebens-Mack et al. 2005 [49]
Yucca schidigera	DQ069337–DQ069702	Leebens-Mack et al. 2005 [49]
Zea mays	NC_001666	Maier et al. 1995 [98]
Eudicots
Arabidopsis thaliana	NC_000932	Sato et al. 1999 [99]
Atropa belladonna	NC_004561	Schmitz-Linneweber et al. 2002 [100]
Citrus sinensis	DQ864733	Bausher et al. unpublished
Cucumis sativus	NC_007144	Plader et al. unpublished
Daucus carota	DQ898156	Current study
Eucalyptus globulus	AY780259	Steane 2005 [101]
Glycine max	NC_007942	Saski et al. 2005 [78]
Gossypium hirsutum	NC_007944	Lee et al. [36]
Lotus corniculatus	NC_002694	Kato et al. 2000 [75]
Medicago truncatula	NC_003119	Lin et al., unpublished
Nicotiana tabacum	NC_001879	Shinozaki et al. 1986 [102]
Oenothera elata	NC_002693	Hupfer et al. 2000 [77]
Panax schinseng	NC_006290	Kim and Lee 2004 [58]
Ranunculus macranthus	DQ069337–DQ069702	Leebens-Mack et al. 2005 [49]
Solanum lycopersicum	DQ347959	Daniell et al. [37]
Solanum bulbocastanum	NC_007943	Daniell et al. [37]
Spinacia oleracea	NC_002202	Schmitz-Linneweber et al. 2001 [103]
Vitis vinifera	NC_007957	Jansen et al. 2006 [35]

Ruhlman et al. BMC Genomics 2006 7:222 doi:10.1186/1471-2164-7-222

Table 3