Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a

doi:10.1186/1471-2164-7-173

BMC Genomics

Volume 7

Viewing options:

Abstract
Full text
PDF (483KB)
Additional files

Associated material:

Related literature:

Articles citing this article
on BioMed Central
on Google Scholar
on ISI Web of Science
on PubMed Central
Other articles by authors
on Google Scholar

Nie H
Yang F
Zhang X
Yang J
Chen L
Wang J
Xiong Z
Peng J
Sun L
Dong J
Xue Y
Xu X
Chen S
Yao Z
Shen Y
Jin Q

on PubMed

Nie H
Yang F
Zhang X
Yang J
Chen L
Wang J
Xiong Z
Peng J
Sun L
Dong J
Xue Y
Xu X
Chen S
Yao Z
Shen Y
Jin Q
Related articles/pages
on Google

on Google Scholar

on PubMed

Tools:

Post to:

Research article

Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a

Huan Nie¹^,2^* , Fan Yang²^* , Xiaobing Zhang²^* , Jian Yang²^* , Lihong Chen² , Jing Wang² , Zhaohui Xiong² , Junping Peng² , Lilian Sun² , Jie Dong² , Ying Xue² , Xingye Xu² , Shuxia Chen² , Zhijian Yao³ , Yan Shen³ and Qi Jin¹^,2^,4

¹College of Biological Sciences China Agricultural University, Beijing 100094, China

²State Key Laboratory for Molecular Virology and Genetic Engineering, Beijing 100052, China

³National Center of Human Genome Research, Beijing 100176, China

⁴Institute of Pathogen Biology, Chinese Academy of Medical Sciences, Beijing 100730, China

author email corresponding author email* Contributed equally

BMC Genomics 2006, 7:173doi:10.1186/1471-2164-7-173


Published:	6 July 2006

Additional files

Additional file 1:

Circular genome map of the Sf8401 genome. The outer scale is marked every 200 kb. Circles range from 1 (outer circle) to 9 (inner circle). Circles 1 and 2, ORFs encoded by leading and lagging strands respectively, with color code for functions: salmon, translation, ribosomal structure and biogenesis; light blue, transcription; cyan, DNA replication, recombination and repair; turquoise, cell division; deep pink, post-translational modification, protein turnover and chaperones; olive drab, cell envelope biogenesis; purple, cell motility and secretion; forest green, inorganic ion transport and metabolism; magenta, signal transduction; red, energy production; sienna, carbohydrate transport and metabolism; yellow, amino acid transport; orange, nucleotide transport and metabolism; gold, co-enzyme transport and metabolism; dark blue, lipid metabolism; blue, secondary metabolites, transport and catabolism; gray, general function prediction only; black, function unclassified or unknown. Circle 3, distribution of pseudogenes. Circles 4 and 5, distributions of IS1/IS1N and other IS-species respectively. Circles 6 and 7, G+C content and GC skew (G-C/G+C) respectively with a window size of 10 kb. Circles 8 and 9, distributions of tRNA genes and rrn operons respectively. The replication origin and terminus are indicated.

Format: JPEG Size: 717KB Download file

Additional file 2:

Orthologs of the MG1655 proteomes in Sf8401 and Sf301. 4194 proteins of MG1655 are selected to study their orthologs in Sf8401 and Sf301.

Format: XLS Size: 640KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

Orthologs of Sf8401 specific proteins (relative to MG1655) in other Shigella genomes. This gives the full list of 393 Sf8401-specific proteins relative to MG1655 and their orthologs in other Shigella genomes.

Format: XLS Size: 84KB Download file

This file can be viewed with: Microsoft Excel Viewer