Research article
Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes- a genomic approach
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* Corresponding author: Ernesto Pérez-Rueda erueda@ibt.unam.mx
1 Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, 62100, México
2 Programa de Genómica Computacional, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, 62100, México
BMC Genomics 2006, 7:147 doi:10.1186/1471-2164-7-147
Published: 13 June 2006Additional files
Additional File 1:
Table S1. Collection of 237 DNA-binding TFs identified in B. subtilis. Columns are as follows: Common name, Protein ID, family, BG_ID, confidence level (identification method) and regulatory role.
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Additional File 2:
Table S2. Functional description of regulatory families. Columns are as follows: Family name, number of members, regulatory role, HTH position, DNA-binding structure and physiological role.
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Additional File 3:
Table S3. Identification of TFs by Superfamily searches. Nomenclature: Gene ID, Ids from Superfamily (DBD), and Domain Position.
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Additional File 4:
Table S4. Identification of TFs by HMM family specific. Columns are as follow: Gene ID, Family name, start and end position domains in the TF, bit and E-value scores.
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Additional File 5:
Table S5. Genomes analyzed in this work. Columns are as follows: Cellular division, order, Organism name, Taxonomic Identifier, Genome size (Mbp), number of TFs and Genome code used in the manuscript.
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