BMC Genomics

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BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species

Emma Griffiths, Michael S Ventresca and Radhey S Gupta*

BMC Genomics 2006, 7:14 doi:10.1186/1471-2164-7-14

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Research article   Open Access

The core and unique proteins of haloarchaea

Melinda D Capes, Priya DasSarma, Shiladitya DasSarma BMC Genomics 2012, 13:39 (24 January 2012)

Research article   Open Access

Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and Bos taurus cattle

Manuel Rodriguez-Valle, Ala Lew-Tabor, Cedric Gondro, Paula Moolhuijzen, Megan Vance, Felix D Guerrero, Matthew Bellgard, Wayne Jorgensen BMC Genomics 2010, 11:437 (19 July 2010)

Research article   Open Access

The chlamydial functional homolog of KsgA confers kasugamycin sensitivity to Chlamydia trachomatis and impacts bacterial fitness

Rachel Binet, Anthony T Maurelli BMC Microbiology 2009, 9:279 (31 December 2009)

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Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties

Jos Boekhorst, Berend Snel BMC Bioinformatics 2007, 8:356 (21 September 2007)

Using basic gene properties like gene length and gene order dramatically improves the division of results in the BLAST 'gray zone' into spurious matches and genuine hits.

Research article   Open Access

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species

Radhey S Gupta, Emily Lorenzini BMC Evolutionary Biology 2007, 7:71 (8 May 2007)

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Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

Beile Gao, Radhey S Gupta BMC Genomics 2007, 8:86 (29 March 2007)

Research article   Open Access

Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales)

Radhey S Gupta BMC Genomics 2006, 7:167 (4 July 2006)