Table 4

GO functional terms for B. anynana genes annotated to Drosophila CG numbers

GO TERMS

#

%

P-value


Molecular function

Signal transducer activity (GO: 0004871)

72

7

0.3025

Structural molecule activity (GO: 0005198)

195

25

Motor activity (GO: 0003774)

15

16

Catalytic activity (GO: 0003824)

568

14

Transporter activity (GO: 0005215)

151

12

0.3294

Binding (GO: 0005488)

651

15

Antioxidant activity (GO: 0016209)

13

33

Enzyme regulator activity (GO: 0030528)

52

14

Transcription regulator activity (GO: 0030528)

103

12

0.0011

Transcription factor activity (GO: 0003700)

28

7

Translation regulator activity (GO: 0045182)

26

28

Biological process

Development (GO: 0007275)

190

8

Larval or pupal development (GO: 0002165)

57

10

Pattern specification (GO: 0007389)

37

10

Metamorphosis (GO: 0007552)

43

9

Aging (GO: 0007568)

5

10

Pigmentation (GO: 0048066)

4

7

Regulation of development (GO: 0050793)

5

7

Morphogenesis (GO: 0009653)

89

9

0.1183

Embryonic development (GO: 0009790)

46

9

Physiological process (GO: 0007582)

1013

13

Behavior (GO: 0007610)

31

8

Cellular process (GO: 0009987)

1000

13

Regulation of biological process (GO: 0050789)

217

13

Highlights

Structural constituent of ribosome (GO: 0003735)

110

57

Tubulin (GO: 0045298)

4

25

Wing disc development (GO: 0035220)

21

11

Tracheal system development (GO: 0007424)

13

10

Wnt receptor signaling pathway (GO: 0016055)

11

15

sevenless signaling pathway (GO: 0045500)

2

22

Notch signaling pathway (GO: 0007219)

3

7

frizzled signaling pathway (GO: 0007222)

6

29

Eye pigment metabolism (GO: 0042441)

4

13


# is the number of B. anynana gene annotations obtained via BLAST analysis D. melanogaster and B. mori (total CG numbers in B. anynana with GO annotation = 1,164) that belong to the listed GO categories. % refers to the proportion of D. melanogaster genes (total CG numbers in D. melanogaster with GO annotation = 10,391) found in B. anynana for each GO category. The categories specified in this list are a limited subset of all GO categories found to be represented [see complete list in 7]. A Chi-square test was performed for the null hypothesis that the fraction of B. anynana UniGenes in each GO category relative to the total number of B. anynana UniGenes with an assigned category is equivalent to the fraction of D. melanogaster genes in that category relative to all D. melanogaster genes with a GO assignment. For the cases where Chi-square p > 0.0001, p-values are provided. All other cases are p < 0.0001.

Beldade et al. BMC Genomics 2006 7:130   doi:10.1186/1471-2164-7-130

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