Comparing independent microarray studies: the case of human embryonic stem cells

doi:10.1186/1471-2164-6-99

BMC Genomics

Volume 6

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Suárez-Fariñas M
Noggle S
Heke M
Hemmati-Brivanlou A
Magnasco MO

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Magnasco MO
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Methodology article

Comparing independent microarray studies: the case of human embryonic stem cells

Mayte Suárez-Fariñas¹ , Scott Noggle² , Michael Heke² , Ali Hemmati-Brivanlou² and Marcelo O Magnasco¹

¹Center for Studies in Physics and Biology, The Rockefeller University. 1230 York Ave, Box 212, New York, NY 10021, U.S.A

²Department Laboratory of Molecular Vertebrate Embryology, Camridge, The Rockefeller University. 1230 York Ave, Box 32, New York, NY 10021, U.S.A

author email corresponding author email

BMC Genomics 2005, 6:99doi:10.1186/1471-2164-6-99


Published:	22 July 2005

Additional files

Additional File 1:

Supplementary Discussion and Methods.

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Additional File 2:

Up-regulated genes in the intersection. List of up-regulated genes in the intersection of the 3 studies. In html format, including annotations and links.

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Additional File 3:

Down-regulated genes in the intersection. List of down-regulated genes in the intersection of the 3 studies. In html format, including annotations and links.

Format: HTML Size: 159KB Download file

Additional File 4:

RT-PCR primer sequences used. Primer sequences used in real-time RT-PCR.

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Additional File 5:

real RT-PCR results.

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Additional File 6:

Top 50 incoherent genes. List of the top 50 genes with the most negative coherence score.

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Additional File 7:

Up-regulated genes – EASE analysis. EASE analysis for the up-regulated genes in the intersection of the three studies

Format: XLS Size: 61KB Download file

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Additional File 8:

Down-regulated genes – EASE analysis. EASE analysis for the up-regulated genes in the intersection of the three studies

Format: XLS Size: 47KB Download file

This file can be viewed with: Microsoft Excel Viewer