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Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data

Anne-Sophie Carpentier*, Bruno Torrésani, Alex Grossmann and Alain Hénaut

BMC Genomics 2005, 6:84 doi:10.1186/1471-2164-6-84

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Differential replication dynamics for large and small Vibrio chromosomes affect gene dosage, expression and location

Rikard Dryselius, Kaori Izutsu, Takeshi Honda, Tetsuya Iida BMC Genomics 2008, 9:559 (26 November 2008)

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Analyzing stochastic transcription to elucidate the nucleoid's organization

Alessandra Riva, Anne-Sophie Carpentier, Frédérique Barloy-Hubler, Angélique Chéron, Alain Hénaut BMC Genomics 2008, 9:125 (10 March 2008)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Randomly chosen genes undergoing background or stochastic transcription show distinct patterns of co-transcription, with both short-range and long-range correlation in the distance between genes and influence from the physical constraints that bring about DNA looping.

Research article   Open Access

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola

José Viñuelas, Federica Calevro, Didier Remond, Jacques Bernillon, Yvan Rahbé, Gérard Febvay, Jean-Michel Fayard, Hubert Charles BMC Genomics 2007, 8:143 (4 June 2007)

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