Table 3

GO mappings for A. caninum and A. ceylanicum clusters

A. caninum

A. ceylanicum

Categories and subcategories

Representation

% Representation of total

Representation

% Representation of total


biological process

cellular process

192

4.80

238

4.36

cell communication

62

1.55

66

1.21

cell motility

1

0.03

0

0.00

cell death

1

0.03

1

0.02

cell growth and/or maintaince

140

3.50

180

3.30

transport

119

2.98

153

2.80

cell organization and biogenesis

21

0.53

32

0.59

cell proliferation

4

0.10

6

0.11

cell homeostasis

1

0.03

4

0.07

physiological process

579

14.48

785

14.38

response to endogenous stimulus

1

0.03

5

0.09

response to external stimulus

12

0.30

16

0.29

response to stress

8

0.20

14

0.26

death

1

0.03

1

0.02

metabolism

466

11.65

653

11.96

hemostasis

1

0.03

0

0.00

homeostasis

3

0.08

4

0.07

secretion

0

0.00

1

0.02

development

11

0.28

18

0.33


cellular component

cell

327

8.18

385

7.05

intracellular

212

5.30

277

5.08

cytoplasm

166

4.15

181

3.32

nucleus

45

1.13

84

1.54

ribonucleoprotein complex

102

2.55

102

1.87

respiratory chain complex

4

0.10

5

0.09

chromosome

8

0.20

13

0.24

thylakoid

0

0.00

1

0.02

membrane

146

3.65

146

2.67

extracellular

33

0.83

50

0.92

Unlocalized

1

0.03

7

0.13


molecular function

binding

323

8.08

521

9.55

carbohydrate binding

6

0.15

20

0.37

lipid binding

6

0.15

12

0.22

metal ion binding

56

1.40

72

1.32

nucleic acid binding

109

2.73

201

3.68

nucleotide binding

133

3.33

214

3.92

protein binding

11

0.28

22

0.40

apoptosis regulator activity

1

0.03

1

0.02

chaperone activity

5

0.13

10

0.18

cell adhesion molecule activity

2

0.05

1

0.02

catalytic activity

293

7.33

445

8.15

enzyme regulator activity

24

0.60

35

0.64

molecular function unknown

38

0.95

46

0.84

motor activity

3

0.08

12

0.22

signal transducer activity

55

1.38

61

1.12

structural molecule activity

107

2.68

127

2.33

transcription regulator activity

19

0.48

33

0.60

translation regulator activity

14

0.35

17

0.31

transporter activity

128

3.20

180

3.30


Mitreva et al. BMC Genomics 2005 6:58   doi:10.1186/1471-2164-6-58

Open Data