The odorant receptor repertoire of teleost fish

doi:10.1186/1471-2164-6-173

BMC Genomics
Volume 6

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Research article

The odorant receptor repertoire of teleost fish

Tyler S Alioto¹^,2 and John Ngai¹

¹Department of Molecular and Cell Biology, Functional Genomics Laboratory, Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA

²Grup de Recerca en Informàtica Biomèdica, Institut Municipal d'Investigació Mèdica, Universitat Pompeu Fabra, Centre de Regulació Genòmica, Psg. Marítim 37-49, 08003 Barcelona, Spain

author email corresponding author email

BMC Genomics 2005, 6:173doi:10.1186/1471-2164-6-173


Published:	6 December 2005

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Additional File 1:

Supplement: Methods and legends for Figures S1-S8 and Tables S1-S4

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Additional File 2:

Figure S1. Multiple sequence alignment of zebrafish OR amino acid translations.

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Additional File 3:

Figure S2. Multiple sequence alignment of fugu OR amino acid translations.

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Additional File 4:

Figure S3. Multiple sequence alignment of tetraodon OR amino acid translations.

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Additional File 5:

Figure S4. Phylogeny of zebrafish ORs using maximum likelihood analysis.

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Additional File 6:

Figure S5. Phylogeny of zebrafish and mouse ORs using maximum likelihood analysis.

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Figure S6. Phylogeny of zebrafish, fugu and tetraodon ORs using maximum likelihood analysis.

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Figure S7. Phylogeny of zebrafish and mouse ORs rooted by mouse non-OR GPCRs.

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Figure S8. Phylogeny of zebrafish, fugu, tetraodon and lamprey ORs.

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Additional File 10:

Table S1. The zebrafish OR repertoire.

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Additional File 11:

Table S2. Pairwise intra-subfamily percent identities for zebrafish OR subfamilies.

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Additional File 12:

Table S3. Pairwise inter-subfamily percent identities for zebrafish OR subfamilies.

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Additional File 13:

Table S4. Pairwise inter-group percent identities for zebrafish OR families and mouse Class I and Class II ORs.

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