Table 2

GO terms significantly enriched toward low 2 kb upstream alignment scores. P-values are Bonferroni-corrected. b,m,c represents GO hierarchy (b:biological process, m:molecular function, and c:cellular component). mean: mean alignment score. The mean alignment score for all the genes analyzed is 411.01.

GO accession

GO term description

p-value

mean

# genes

GO:0005840

c

ribosome

2.74E-05

501.18

154

GO:0030529

c

ribonucleoprotein complex

2.69E-04

551.19

269

GO:0008270

m

zinc ion binding

3.03E-04

639.02

1089

GO:0003723

m

RNA binding

9.62E-04

579.31

410

GO:0003735

m

structural constituent of ribosome

1.21E-03

531.85

174

GO:0046914

m

transition metal ion binding

6.70E-03

647.13

1229

GO:0006952

b

defense response

1.86E-02

612.35

694

GO:0044249

b

cellular biosynthesis

2.00E-02

622.59

805

GO:0005739

c

mitochondrion

2.71E-02

610.17

529

GO:0003824

m

catalytic activity

3.43E-02

661.43

3900

GO:0009058

b

biosynthesis

3.92E-02

625.43

840

Lee et al. BMC Genomics 2005 6:168   doi:10.1186/1471-2164-6-168