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Similarity match of Ginkgo unigenes to genes involved in development. The G. biloba unigene set was compared to Genbank using a BLASTP cut-off score < e-5. The top match is listed under subject description. The organ(s) from which the listed ESTs were detected are: G = megagametophyte, I = microgametophyte, and L = leaf. |
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| Genes in Ginkgo biloba with similarity to developmental genes in other plants |
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| Contig id. |
organ |
BLAST homology match |
E-value |
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| A2725 |
G |
gi|1903019|emb|CAA71599.1| curly leaf [A. thaliana] |
4.00E-37 |
| A3095 |
I |
gi|15231388|ref|NP_188001.1| LOB domain family protein [A. thaliana] |
2.00E-21 |
| A2815 |
I |
gi|42541156|gb|AAS19471.1| EARLY FLOWERING 5 [A. thaliana] |
1.00E-33 |
| A3351 |
I |
gi|4903139|dbj|BAA77836.1| extensive homology to FT (FLOWERING LOCUS T, AB027504) |
4.00E-10 |
| A241 |
I, L |
gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides] |
1.00E-30 |
| A1591 |
L |
gb|AAG43405.1|AF172931_1 homeobox 1 [Picea abies] |
5.00E-23 |
| A1591 |
G |
gi|14715183|emb|CAC44080.1| putative MADS-domain transcription factor DEFH7 [A. majus] |
2.00E-39 |
| A2737 |
G |
gi|30230270|gb|AAM76208.1| AGAMOUS-like MADS-box transcription factor [Ginkgo biloba] |
5.00E-28 |
| A2850 |
I |
gi|25307918|pir||S51935 probable MADS-box protein dal1 – Norway spruce dal1 [Picea abies] |
5.00E-72 |
| A629 |
G, L |
gi|7446554|pir||T10751 MADS-box protein MADS9 – Monterey pine |
6.00E-17 |
| A352 |
G, I |
gi|7446559|pir||T09571 MADS box protein MADS2 – Monterey pine |
4.00E-75 |
| A914 |
G, I |
gi|18401293|ref|NP_565632.1| COP9 / CSN signalosome complex subunit [A. thaliana] |
1.00E-45 |
| A2730 |
G |
gi|15225760|ref|NP_180854.1| COP1 regulatory protein [A. thaliana] |
2.00E-60 |
| A944 |
G, I |
gi|30694320|ref|NP_849784.1|argonaute protein(AG01) [A. thaliana] |
1.00E-56 |
Brenner et al. BMC Genomics 2005 6:143 doi:10.1186/1471-2164-6-143 |
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