Table I |
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|
Glycoside hydrolases analyzed in the work |
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|
Name |
Family, subfamily |
Organism |
Accession numbera |
Protein function (annotation) |
Lengthb |
|
|
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|
97A1_BACTH |
GH97, 97a |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAC44671 |
alpha-glucosidase SusB |
738 |
|
97A2_BACTH |
GH97, 97a |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO79686 |
ORF: alpha-glucosidase |
719 |
|
97A3_BACTH |
GH97, 97a |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO75790 |
ORF: alpha-glucosidase |
671 |
|
97B1_BACTH |
GH97, 97b |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO76978 |
ORF: putative alpha-glucosidase |
662 |
|
97B2_BACTH |
GH97, 97b |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO78400 |
ORF: putative alpha-glucosidase |
650 |
|
97B3_BACTH |
GH97, 97b |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO77727 |
ORF: alpha-glucosidase |
649 |
|
97B4_BACTH |
GH97, 97b |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO78269 |
ORF: putative alpha-glucosidase |
674 |
|
97C1_BACTH |
GH97, 97c |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO78766 |
ORF: alpha-glucosidase |
647 |
|
97C2_BACTH |
GH97, 97c |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO78769 |
ORF: putative alpha-glucosidase |
638 |
|
97E1_BACTH |
GH97, 97e |
Bacteroides thetaiotaomicron VPI-5482 = ATCC29148 |
AAO75239 |
ORF: putative alpha-glucosidase |
644 |
|
97A1_BACFR |
GH97, 97a |
Bacteroides fragilis YCH46 |
BAD47941 |
ORF: alpha-glucosidase |
719 |
|
97A2_BACFR |
GH97, 97a |
Bacteroides fragilis YCH46 |
BAD48072 |
ORF: alpha-glucosidase |
671 |
|
97B1_BACFR |
GH97, 97b |
Bacteroides fragilis YCH46 |
BAD50730 |
ORF: putative alpha-glucosidase |
649 |
|
97B2_BACFR |
GH97, 97b |
Bacteroides fragilis YCH46 |
BAD50235 |
ORF: putative alpha-glucosidase |
649 |
|
97A1_TANFO |
GH97, 97a |
Tannerella forsythensis (Bacteroides forsythus) ATCC43037 |
AAO33827 |
alpha-D-glucosidase SusB |
708 |
|
97A1_PREIN |
GH97, 97a |
Prevotella intermedia 17 |
(TIGR_246198) |
ORF |
733 |
|
97A1_PRERU |
GH97, 97a |
Prevotella ruminicola 23 |
(TIGR_264731) |
ORF |
737 |
|
97B1_PRERU |
GH97, 97b |
Prevotella ruminicola 23 |
(TIGR_264731) |
ORF |
645 |
|
97B2_PRERU |
GH97, 97b |
Prevotella ruminicola 23 |
(TIGR_264731) |
ORF |
658 |
|
97C1_PRERU |
GH97, 97c |
Prevotella ruminicola 23 |
(TIGR_264731) |
ORF |
621 |
|
97C2_PRERU |
GH97, 97c |
Prevotella ruminicola 23 |
(TIGR_264731) |
ORF |
639 |
|
97C3_PRERU |
GH97, 97c |
Prevotella ruminicola 23 |
(TIGR_264731) |
ORF |
645 |
|
97A1_SALRU |
GH97, 97a |
Salinibacter ruber DSM13855 |
(NC_006812) |
ORF |
708 |
|
97A1_AZOVI |
GH97, 97a |
Azotobacter vinelandii AvOP |
EAM07225 |
ORF: alpha-glucosidase |
673 |
|
97A1_XANAX |
GH97, 97a |
Xanthomonas axonopodis pv. citri 306 |
AAM37448 |
ORF: alpha-glucosidase |
693 |
|
97D1_XANAX |
GH97, 97d |
Xanthomonas axonopodis pv. citri 306 |
AAM38156 |
ORF: alpha-glucosidase |
654 |
|
97A1_XANCA |
GH97, 97a |
Xanthomonas campestris pv. campestris ATCC33913 |
AAM41744 |
ORF: alpha-glucosidase |
692 |
|
97D1_XANCA |
GH97, 97d |
Xanthomonas campestris pv. campestris ATCC33913 |
AAM42433 |
ORF: alpha-glucosidase |
654 |
|
97A1_MICDE |
GH97, 97a |
Microbulbifer (Saccharophagus) degradans 2–40 |
ZP_00315606 |
ORF: hypothetical protein |
684 |
|
97B1_MICDE |
GH97, 97b |
Microbulbifer (Saccharophagus) degradans 2–40 |
ZP_00317369 |
ORF: hypothetical protein |
679 |
|
97C1_MICDE |
GH97, 97c |
Microbulbifer (Saccharophagus) degradans 2–40 |
ZP_00317507 |
ORF: hypothetical protein |
674 |
|
97C2_MICDE |
GH97, 97c |
Microbulbifer (Saccharophagus) degradans 2–40 |
ZP_00315142 |
ORF: hypothetical protein |
661 |
|
97A1_SHEON |
GH97, 97a |
Shewanella oneidensis MR-1 |
AAN55484 |
ORF: alpha-glucosidase |
699 |
|
97A1_SHEBA |
GH97, 97a |
Shewanella baltica OS155 |
EAN43632 |
ORF: alpha-glucosidase |
710 |
|
97A1_SHEFR |
GH97, 97a |
Shewanella frigidimarina NCIMB400 |
EAN73178 |
ORF: alpha-glucosidase |
697 |
|
97A1_SHEDE |
GH97, 97a |
Shewanella denitrificans OS-217 |
EAN70289 |
ORF: alpha-glucosidase |
727 |
|
97A1_SHEAM |
GH97, 97a |
Shewanella amazonensis SB2B |
EAN38820 |
ORF: alpha-glucosidase |
676 |
|
97A1_NOVAR |
GH97, 97a |
Novosphingobium aromaticivorans DSM12444 |
ZP_00303588 |
ORF: transketolase |
682 |
|
97A1_SPHAL |
GH97, 97a |
Sphingopyxis alaskensis RB2256 |
EAN45679 |
ORF: alpha-glucosidase |
680 |
|
97D1_CAUCR |
GH97, 97d |
Caulobacter crescentus CB15 |
AAK22781 |
ORF: putative alpha-glucosidase |
670 |
|
97A1_ERYLI |
GH97, 97a |
Erythrobacter litoralis HTCC2594 |
EAL74063 |
ORF: alpha-glucosidase |
681 |
|
97E1_RHOBA |
GH97, 97e |
Rhodopirellula baltica SH1 (Pirellula sp. 1) |
CAD78916 |
ORF: alpha-glucosidase |
645 |
|
97C1_LEIXY |
GH97, 97c |
Leifsonia xyli subsp. xyli CTCB07 |
(NC_006087)* |
ORF: similar to alpha-glucosidase |
775* |
|
97X1_SOLUS |
GH97 |
Solibacter usitatus Ellin6076 |
EAM58489 |
ORF: hypothetical protein |
619 |
|
97A1_HALMA |
GH97, 97a |
Haloarcula marismortui ATCC43049 |
AAV45265 |
ORF: alpha-glucosidase |
1144 |
|
97A1_ANOGA |
GH97, 97a |
Anopheles gambiae str. PEST (African malaria mosquito) |
(AAAB01006165) |
ORF |
380* |
|
97A2_ANOGA |
GH97, 97a |
Anopheles gambiae str. PEST (African malaria mosquito) |
(AAAB01064948) |
ORF |
209* |
|
97A3_ANOGA |
GH97, 97a |
Anopheles gambiae str. PEST (African malaria mosquito) |
(AAAB01020110) |
ORF |
231* |
|
97A4_ANOGA |
GH97, 97a |
Anopheles gambiae str. PEST (African malaria mosquito) |
(AAAB01068263) |
ORF |
229* |
|
97A1_UNBAC |
GH97, 97a |
uncultured murine large bowel bacterium BAC31B |
AAX16382 |
ORF: alpha-glucosidase |
720 |
|
97A2_UNBAC |
GH97, 97a |
uncultured bacterium |
(AY350337) |
ORF |
106* |
|
97A1_ENSEQ |
GH97, 97a |
environmental sequence (cf. Shewanella SAR-1) |
EAJ06144* |
ORF: unknown |
703 |
|
97A2_ENSEQ |
GH97, 97a |
environmental sequence (cf. Shewanella SAR-2) |
EAI69763 |
ORF: unknown |
699 |
|
97A3_ENSEQ |
GH97, 97a |
environmental sequence |
EAJ75652 |
ORF: unknown |
714 |
|
97A4_ENSEQ |
GH97, 97a |
environmental sequence |
EAI51202 |
ORF: unknown |
713 |
|
97A5_ENSEQ |
GH97, 97a |
environmental sequence |
EAI80962 |
ORF: unknown |
702* |
|
97A6_ENSEQ |
GH97, 97a |
environmental sequence |
EAH92811, EAI03708, EAD44407, EAG79875, EAH92819, EAI36772 |
ORF: unknown |
711 |
|
97A7_ENSEQ |
GH97, 97a |
environmental sequence |
EAJ99185, EAD99255, EAH48404, EAH57728, EAD83763, EAH04981, EAC91563, EAH85977, EAD11728 |
ORF: unknown |
710 |
|
97A8_ENSEQ |
GH97, 97a |
environmental sequence |
EAJ85380, EAH86891 |
ORF: unknown |
669* |
|
97C1_ENSEQ |
GH97, 97c |
environmental sequence |
EAD85224* |
ORF: unknown |
218* |
|
GH27_ORYSA |
GH27, 27a |
Oryza sativa japonica cultivar Nipponbare (rice) |
BAB12570 |
alpha-galactosidase |
417 |
|
GH36_LACPL |
GH36, 36A |
Lactobacillus plantarum ATCC8014 |
AAF02774 |
alpha-galactosidase MelA |
738 |
|
GH31_ECOLI |
GH31 |
Escherichia coli K12 |
AAC76680 |
alpha-xylosidase YicI |
772 |
|
|
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|
aAccession numbers of protein sequences are given according to the NCBI database [72]. Numbers of nucleic sequences are given (in parentheses) if the corresponding protein sequences have not been deposited. In some cases (asterisked), protein sequences were edited by changing the start codon. bProtein length was established as the number of amino acids in the corresponding precursor. Incomplete sequences (protein fragments) are asterisked. |
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|
Naumoff BMC Genomics 2005 6:112 doi:10.1186/1471-2164-6-112 |
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