Table 2

The (G+C)% in different compartments of the 27 organisms

ORGANISM

ABBR.

FLANK (bp)

GC%

INTRON (bp)

GC%

CODING (bp)

GC%


Dictyostelium discoideum

Dd

207722

15.26

22407

11.14

621748

30.32

Plasmodium falciparum

Pf

143401

16.27

18597

12.64

840733

29.41

Tetrahymena thermophila

Tt

60095

20.99

8624

20.14

101889

34.37

Candida albicans

Ca

302347

31.26

3035

33.05

631769

36.93

Manduca sexta

Ms

43331

33.38

17299

30.87

21979

47.79

Caenorhabditis elegans

Ce

737951

32.87

121316

33.07

384627

45.45

Schizosaccharomyces pombe

Spo

432364

32.67

22638

30.44

813101

40.41

Arabidopsis thaliana

At

1256492

33.20

270913

32.05

1015490

45.75

Schistosoma mansoni

Sm

37773

36.12

11760

35.94

39913

40.05

Danio rerio

Dr

232819

35.07

41465

34.21

147459

47.90

Saccharomyces cerevisiae

Sc

1124634

36.06

17273

32.90

2356815

40.14

Drosophila melanogaster

Dm

1238086

37.56

227141

39.54

747774

52.85

Strongylocentrotus purpuratus

Spu

38732

36.85

11450

34.43

24405

53.22

Xenopus laevis

Xl

266034

39.32

183822

38.36

164675

48.08

Oryza sativa

Os

567768

40.35

133898

36.74

394283

55.89

Trypanosoma brucei

Tb

120949

43.19

1621

44.97

415684

50.73

Fugu rubripes

Fr

624550

43.85

230616

43.22

342435

54.13

Zea mays

Zm

611822

43.30

114505

41.21

305091

55.88

Mus musculus

Mm

4571933

46.05

1708894

46.75

1475920

53.15

Anopheles gambiae

Ag

29527

42.93

8028

44.33

24151

56.93

Gallus gallus

Gg

563319

50.08

457259

46.15

369315

55.13

Toxoplasma gondii

Tg

100004

50.01

32167

49.49

94260

54.51

Emericella nidulans

En

75257

48.72

2888

47.13

83665

53.12

Aspergillus niger

An

136216

48.46

15832

45.95

188982

56.48

Neurospora crassa

Nc

154422

50.44

18685

48.88

254177

56.07

Leishmania major

Lm

34029

57.27

54

50.00

70014

60.71

Chlamydomonas reinhardtii

Cr

163614

59.70

49607

62.03

106939

66.55


Zhou et al. BMC Genomics 2004 5:95   doi:10.1186/1471-2164-5-95

Open Data