Table 1

Summary of the sequence files of the 27 organisms studied

ORGANISM

ABBR.

DNA type

DOCUMENTS BEFORE CLEAN-UP

DOCUMENTS AFTER CLEAN-UP

TOTAL (bp)

TOTAL GC%


Dictyostelium discoideum

Dd

single genes

492

440

966261

25.70

Plasmodium falciparum

Pf

single genes

1652

790

1065133

27.11

chromosome II, III

2

2

2007209

19.82

Tetrahymena thermophila

Tt

single genes

109

97

214676

28.89

Candida albicans

Ca

single genes

439

378

959035

35.21

Manduca sexta

Ms

single genes

54

46

119657

35.62

Caenorhabditis elegans

Ce

single genes

234

221

1319875

36.92

Schizosaccharomyces pombe

Spo

single genes

813

720

1346439

37.54

Arabidopsis thaliana

At

single genes

1908

1520

3139637

38.09

Schistosoma mansoni

Sm

single genes

98

74

125605

38.37

Danio rerio

Dr

single genes

339

266

603534

38.60

Saccharomyces cerevisiae

Sc

single genes

2249

928

3815906

38.68

chromosome I-XVI

16

16

11426263

38.45

Drosophila melanogaster

Dm

single genes

1883

968

3459297

39.88

Strongylocentrotus purpuratus

Spu

single genes

153

113

116647

41.78

Xenopus laevis

Xl

single genes

568

411

805354

41.99

Oryza sativa

Os

single genes

605

507

1514656

44.61

Trypanosoma brucei

Tb

single genes

457

368

1039208

46.17

Fugu rubripes

Fr

single genes

216

181

1737132

46.30

Zea mays

Zm

single genes

629

480

1225027

46.92

Mus musculus

Mm

single genes

9288

5179

11191148

47.36

Anopheles gambiae

Ag

single genes

78

43

73592

48.20

Gallus gallus

Gg

single genes

1868

1061

1910331

50.00

Toxoplasma gondii

Tg

single genes

195

117

284187

50.70

Emericella nidulans

En

single genes

72

62

165648

51.07

Aspergillus niger

An

single genes

215

160

386447

52.65

Neurospora crassa

Nc

single genes

252

217

494046

53.37

Leishmania major

Lm

single genes

89

81

129155

59.11

Chlamydomonas reinhardtii

Cr

single genes

136

114

349624

61.84


Zhou et al. BMC Genomics 2004 5:95   doi:10.1186/1471-2164-5-95

Open Data