Table 6 |
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|
The twenty most conserved Tortula gene clusters between Physcomitrella and Arabidopsis |
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|
Tortula Cluster |
Physcomitrella Identity |
Bit Score |
e-value |
|
|
|||
|
Contig_2145 |
PPCContig_497 Q9AY32 (Q9AY32) RRNA intron-encoded homing endonuclease |
813 |
0.0E+00 |
|
Contig_1352 |
PPCContig_406 Q9AVH2 (Q9AVH2) Putative senescence-associated protein (Fra |
630 |
0.0E+00 |
|
Contig_3546 |
PPCContig_1008 O04892 (O04892) Cytochrome P450 like_TBP (EC 1.14.14.1) |
448 |
1.8E-126 |
|
Contig_602 |
PPCContig_359 polyubiquitin UBQ10/SEN3 |
413 |
1.2E-115 |
|
Contig_480 |
PPCContig_12 Q9SPA1 (Q9SPA1) Elongation factor-1 alpha 3 |
306 |
1.4E-83 |
|
Contig_966 |
PPCContig_1903 EF1A_VICFA (O24534) Elongation factor 1-alpha (EF-1-alpha) |
284 |
5.8E-77 |
|
Contig_1126 |
PPCContig_2103 Q41067 (Q41067) Polyubiquitin |
250 |
5.9E-67 |
|
Contig_1901 |
PPCContig_1954 Q8H932 (Q8H932) Alpha tubulin |
241 |
7.4E-64 |
|
Contig_1538 |
PPCContig_4431 heat shock protein hsc70-1 (hsp70-1) (hsc70.1) |
233 |
1.6E-61 |
|
Contig_1444 |
PPCContig_49 ADP-ribosylation factor 1 (ARF1), putative |
208 |
4.6E-54 |
|
Contig_919 |
PPCContig_1049 Q9SXW8 (Q9SXW8) Chlorophyll a/b-binding protein |
205 |
3.0E-53 |
|
Contig_1381 |
PPCContig_2023 Q8S173 (Q8S173) Putative 60S ribosomal protein L37a |
197 |
5.3E-51 |
|
Contig_5058 |
PPCContig_951 Q9SWW8 (Q9SWW8) Actin (Fragment) |
195 |
3.3E-50 |
|
Contig_1676 |
PPCContig_2347 calmodulin |
193 |
8.7E-50 |
|
Contig_1366 |
PPCContig_846 Q84NX8 (Q84NX8) Putative ribosomal protein L19 |
174 |
8.0E-44 |
|
Contig_2369 |
PPCContig_2689 O04664 (O04664) Small RAS-like GTP-binding protein (AT5G551 173 |
9.9E-44 |
|
|
Contig_1934 |
PPCContig_4083 Q9SJB9 (Q9SJB9) Putative translation initiation factor eIF- |
171 |
3.3E-43 |
|
Contig_3793 |
PPCContig_3975 Q9LFN6 (Q9LFN6) DEAD box RNA helicase RH15 |
169 |
1.9E-42 |
|
Contig_1721 |
PPCContig_2679 H33_ARATH (P59169) Histone H3.3 |
165 |
2.1E-41 |
|
Contig_3462 |
PPCContig_970 Q43821 (Q43821) Ubiquitin conjugating enzyme (EC 6.3.2.19) |
160 |
1.2E-39 |
|
Tortula Cluster |
Arabidopsis Identity |
Bit Score |
e-value |
|
Contig_3469 |
ATCG00340 (PSAB) photosystem I P700 apoprotein A2 |
1120 |
0.0E+00 |
|
Contig_882 |
AT1G07930. elongation factor 1-alpha (EF-1-alpha) |
666 |
0.0E+00 |
|
Contig_602 |
AT4G05320.4 polyubiquitin UBQ10/SEN3 |
617 |
1.0E-175 |
|
Contig_2170 |
ATCG00490 (RBCL) riblose 1 |
435 |
5.0E-121 |
|
Contig_1984 |
AT5G02960.1 40S ribosomal protein S23 (RPS23B) |
431 |
5.2E-120 |
|
Contig_1538 |
AT5G02500.1 heat shock protein hsc70-1 (hsp70-1) (hsc70.1) |
366 |
3.2E-100 |
|
Contig_1124 |
AT4G05050.1 polyubiquitin UBQ11 |
341 |
5.8E-93 |
|
Contig_1444 |
AT1G23490.1 ADP-ribosylation factor 1 (ARF1), putative |
307 |
1.2E-82 |
|
Contig_1901 |
AT1G50010.1 tubulin alpha-2/alpha-4 chain (TUA2) |
303 |
3.7E-81 |
|
Contig_52 |
AT3G12580.1 heat shock protein hsp70 |
291 |
1.3E-77 |
|
Contig_1060 |
AT4G38510.1 probable H+-transporting ATPase |
285 |
4.1E-76 |
|
Contig_1125 |
AT4G02890.2 polyubiquitin (UBQ14) |
274 |
8.3E-73 |
|
Contig_3069 |
AT4G40040.1 histone H3.2 |
270 |
1.4E-71 |
|
Contig_1935 |
AT5G08290.1 YLS8, Dim1 homolog |
264 |
1.1E-69 |
|
Contig_2698 |
AT5G45775.2 60S ribosomal protein L11 (RPL11D) |
260 |
1.2E-68 |
|
Contig_5058 |
AT5G09810.1 ACTIN 2/7 (sp|P53492) |
258 |
6.8E-68 |
|
Contig_1676 |
AT3G43810.1 calmodulin |
252 |
2.8E-66 |
|
Contig_3867 |
AT3G05530.1 26S proteasome AAA-ATPase subunit RPT5a |
232 |
3.4E-60 |
|
Contig_347 |
AT3G11940.2 40S ribosomal protein S5 (RPS5B) |
230 |
2.2E-59 |
|
Contig_1052 |
AT2G29550.1 tubulin beta-7 chain (TUB7) |
218 |
1.3E-55 |
|
|
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Oliver et al. BMC Genomics 2004 5:89 doi:10.1186/1471-2164-5-89 |
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