Table 2

Test statistic results by functional class within 9 annotation schema. Amongst 9 schema, a total of 127 functional classes ("Classes") contained expressed genes ("Total Genes"), and of these, 102 classes had a sufficient number of expressed genes (>50, "Class>50") to enumerate ("Genes F>3.51") and calculate fractional representation ("%>3.51", also Figure 3) in the nominal p = 0.05 tail at a test statistic cutoff of 3.51. 7853 genes with expression in at least one tissue >LN(100) were included.

Code

Schema

Classes

Class>50

TotalGenes

Genes F>3.51

%>3.51


1

Biological Process (GO)

22

14

3591

197

5.5

2

Cellular Role (Proteome)

14

13

1775

92

5.2

3

Cellular Component (GO)

15

12

2845

154

5.4

4

Molecular Localization (Proteome)

9

10

1788

93

5.2

5

Organismal Role (Proteome)

17

12

1524

64

4.2

6

Biochemical Function (Proteome)

16

14

2727

150

5.5

7

Subcellular localization (Proteome)

8

7

2047

116

5.7

8

Molecular Function (GO)

21

15

4473

239

5.3

9

Pathways (GenMAPP)

6

5

756

33

4.4


Mutter et al. BMC Genomics 2004 5:88   doi:10.1186/1471-2164-5-88

Open Data