Table 1

Loci and gene ontology (GO) annotation of human chromosome 11 (HSA11).

HSA11 position (Mb)
 Number of Loci
 Loci with GO Term
 Unique GO Terms




Segmenta
 Start
 End


S1
 104.0
 124.4
 200
 70
 176
S1 gap
 104.0
 111.8
 44
 15
 54
S2
 3.9
 18.3
 228
 52
 135
S3
 73.3
 78.5
 80
 27
 68
S4
 30.8
 47.6
 101
 31
 86
S4 gap
 35.9
 44.8
 32
 6
 19
S4'
 58.6
 60.9
 63
 12
 31
All syntenic regions

672
 192
 344
     internal gaps removed

596
 171
 310
Entire chromosome
0.0
 1640
 433
 578
>QTL
 16.3
 20.3
 53
 16
 46
<QTL
 122.4
 126.4
 63
 9
 25

a Syntenic group segments S1, S2, S3, S4, S4' identified by Gautier et al. (2002). Gaps are relatively long segments within a syntenic group that do not contain sequence common to HSA11 and bovine chromosome 15 (BTA15). Segments designated >QTL and <QTL are 4 Mb segments of HSA11 centered around syntenic markers defining boundaries of S1 (<QTL) and S2 (>QTL), flanking the BTA15 meat tenderness QTL identified by Keele et al. (1998). All syntenic regions represents the union of S1, S2, S3, S4 and S4'. Entire chromosome includes all loci with a position established on HSA11 sequence.

Snelling et al. BMC Genomics 2004 5:77   doi:10.1186/1471-2164-5-77