Table 5 |
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|
A selection of genes that are differentially expressed in leaves or in roots |
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|
Clone Identification |
GenBank accession no. |
Average Ratio1 |
Function2 |
Annotation (BLAST hit and organism) |
|
|
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|
Leaves up-regulated |
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|
Gm-b10BB-41 |
AI495218 |
0.103 |
en |
Rubisco (Glycine max) |
|
Gm-r1088-7900 |
BU550654 |
0.294 |
en |
Light harvesting chlorophyll a/b binding protein (Arabidopsis thaliana) |
|
Gm-r1088-8981 |
BU549821 |
0.261 |
en |
Photosystem I subunit (Oryza sativa) |
|
Gm-r1088-3538 |
BU546899 |
0.365 |
en |
Thylakoid lumen protein (Arabidopsis thaliana) |
|
Gm-b10BB-47 |
AW185639 |
0.171 |
en |
Plastocyanin precursor (Glycine max) |
|
Gm-r1088-2905 |
BU546179 |
0.258 |
en |
Trehalose-6-phosphate phosphatase (Arabidopsis thaliana) |
|
Gm-r1088-7106 |
BU548940 |
0.150 |
st |
Vegetative Storage Protein (Glycine max) |
|
Gm-r1088-5827 |
BU548964 |
0.465 |
df |
Acidic chitinase (Glycine max) |
|
Gm-r1088-6724 |
BU549206 |
0.217 |
cmg |
Putative calreticulin (Oryza sativa) |
|
Gm-r1088-3756 |
BU546067 |
0.415 |
cmg |
Cytochrome P450 (Pyrus communis) |
|
Gm-r1088-8229 |
BU550097 |
0.454 |
cmg |
Catalase (Glycine max) |
|
Gm-r1088-5243 |
BU547961 |
0.143 |
cmg |
Putative serine carboxypeptidase II-3 precursor (Oryza sativa) |
|
Gm-r1088-1433 |
BU545435 |
0.200 |
cmg |
H protein (Flaveria anomala) |
|
Gm-b10BB-12 |
AI900038 |
0.211 |
cmg |
F3H (Flavanone-3-Hydroxylase) (Glycine max) |
|
Gm-r1088-4994 |
BU547986 |
0.205 |
cmg |
Matrix metalloproteinase MMP2 (Glycine max) |
|
Gm-r1088-2794 |
BU547254 |
0.138 |
cmg |
Putative lipoic acid synthase (LIP1) (Arabidopsis thaliana) |
|
Gm-r1088-4578 |
BU547484 |
0.165 |
cmg |
Lipid transfer protein-like protein (Retama raetam) |
|
Roots up-regulated |
||||
|
Gm-r1088-5321 |
BU547784 |
3.806 |
no |
Nodulin-26 (Glycine max) |
|
Gm-r1088-7410 |
BU550525 |
2.304 |
no |
MtN19 homolog (Medicago truncatula) |
|
Gm-r1088-6955 |
BU551008 |
4.630 |
no |
Similar to nodulins and lipase homolog (Arabidopsis thaliana) |
|
Gm-r1088-6384 |
BU550458 |
4.431 |
to |
bZIP transcription factor (Arabidopsis thaliana) |
|
Gm-b10BB-11 |
AI930858 |
3.008 |
df |
Chalcone isomerase (Glycine max) |
|
Gm-r1088-6204 |
BU547671 |
2.541 |
cmg |
Putative aquaporin (tonoplast intrinsic protein) (Arabidopsis thaliana) |
|
Gm-r1088-2818 |
BU546503 |
2.848 |
cmg |
Phosphoenolpyruvate carboxkinase (Flaveria trinervia) |
|
Gm-r1088-1741 |
BU544616 |
2.724 |
cmg |
Similar to sucrose synthase (Pisum sativum) |
|
Gm-b10BB-37 |
AW309104 |
6.228 |
cmg |
Proline-rich protein (Glycine max) |
|
Gm-b10BB-38 |
AI442449 |
2.233 |
cmg |
DAD-1 (Defender Against apoptopic cell Death) (Glycine max) |
|
Gm-r1088-5369 |
BU547794 |
8.372 |
cmg |
Ripening related protein (Glycine max) |
|
Gm-r1088-7112 |
BU548943 |
6.661 |
cmg |
Germin-like protein (Phaseolus vulgaris) |
|
Gm-r1088-5330 |
BU547868 |
4.974 |
cmg |
Pectinesterase (EC 3.1.1.11) precursor (Vigna radiata) |
|
Gm-r1088-6104 |
BU549267 |
4.554 |
cmg |
Asparagine synthase (glutamine-hydrolyzing) (Glycine max) |
|
Gm-r1088-741 |
BU544257 |
2.455 |
cmg |
Cationic peroxidase (Glycine max) |
|
Gm-b10BB-45 |
AW318233 |
2.135 |
cmg |
Tubulin (b chain) (Glycine max) |
|
Gm-r1088-5315 |
BU547781 |
4.334 |
u |
Specific tissue protein 1 (Cicer arietinum) |
|
Gm-r1088-5332 |
BU547869 |
4.267 |
oth |
Auxin-repressed protein (Robinia pseudoacacia) |
|
|
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|
1 The average ratios of individual values from two slides after normalization and using a dye swap procedure. 2 en – energy; st – storage; to – transcription; cmg – cell growth and maintenance; u – unknown; oth – other; df – defense; no – nodulation related |
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|
Vodkin et al. BMC Genomics 2004 5:73 doi:10.1186/1471-2164-5-73 |
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