Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing
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* Corresponding author: Shobhit Gupta gupta@molgen.mpg.de
BMC Genomics 2004, 5:72 doi:10.1186/1471-2164-5-72
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BioMed Central: 9 citations
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Proceedings
Towards reliable isoform quantification using RNA-SEQ data Brian E Howard, Steffen Heber BMC Bioinformatics 2010, 11(Suppl 3):S6 (29 April 2010) |
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Methodology article
Differential splicing using whole-transcript microarrays Mark D Robinson, Terence P Speed BMC Bioinformatics 2009, 10:156 (22 May 2009) The Affymetrix GeneChip microarray platform, widely used to assay gene expression, can also detect differential splicing events with the help of a new statistical method called FIRMAGene that analyses information from poorly fitting adjacent probes.
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Research article
Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays Hannah C Cheung, Keith A Baggerly, Spiridon Tsavachidis, Linda L Bachinski, Valerie L Neubauer, Tamara J Nixon, Kenneth D Aldape, Gilbert J Cote, Ralf Krahe BMC Genomics 2008, 9:216 (12 May 2008) |
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Research article
Walter Salzburger, Susan CP Renn, Dirk Steinke, Ingo Braasch, Hans A Hofmann, Axel Meyer BMC Genomics 2008, 9:96 (25 February 2008) |
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Database
Pierre de la Grange, Martin Dutertre, Margot Correa, Didier Auboeuf BMC Bioinformatics 2007, 8:180 (4 June 2007) |
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Research
Discovery of tissue-specific exons using comprehensive human exon microarrays Tyson A Clark, Anthony C Schweitzer, Tina X Chen, Michelle K Staples, Gang Lu, Hui Wang, Alan Williams, John E Blume Genome Biology 2007, 8:R64 (24 April 2007) Comprehensive exon microarrays with a simple intra-gene normalization algorithm were used to detect human tissue-specific alternative splicing events, suggesting significant expression outside of known exons and well annotated genes and a high frequency of alternative splicing events. |
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Research article
Heike Pospisil, Alexander Herrmann, Kristine Butherus, Stefan Pirson, Jens G Reich, Wolfgang Kemmner BMC Genomics 2006, 7:148 (13 June 2006) |
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Research article
Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis Vladimir N Babenko, Malay K Basu, Fyodor A Kondrashov, Igor B Rogozin, Eugene V Koonin BMC Cancer 2006, 6:36 (9 February 2006) Genome-wide analysis of probable somatic mutations in normal and malignant tissue suggests that positive selection for gain of function may affect a number of genes during tumorigenesis.
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Software
Erdahl T Teber, Edward Crawford, Kent B Bolton, Derek Van Dyk, Peter R Schofield, Vimal Kapoor, W Bret Church BMC Bioinformatics 2006, 7:33 (23 January 2006) |