Table 3 |
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|
List of genes evaluated using qrtPCR. For each gene, the microarray and qrtPCR brain/pancreas log2 ratios are listed. Raw CT values, qrtPCR primer/probe sequences, and corresponding array probe names are available in supplementary material [see additional files 1, 2, and 3, respectively]. |
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|
Gene |
NCBI Acc |
Description |
qrtPCR |
CodeLink |
GeneChip |
|
|
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|
MLP |
NM_023009.1 |
MARCKS-like protein |
2.33 |
2.08 |
4.20 |
|
COX7A2L |
NM_004718.1 |
cytochrome c oxidase subunit VIIa polypeptide 2 like |
1.19 |
0.10 |
-0.31 |
|
COL6A3 |
NM_004369.1 |
collagen, type VI, alpha 3, transcript variant 1 |
-4.80 |
-4.75 |
-5.02 |
|
PRDX3 |
NM_006793.1 |
peroxiredoxin 3, nuclear gene encoding mitochondrial protein |
0.82 |
0.81 |
-0.42 |
|
CDKN1A |
NM_000389.1 |
cyclin-dependent kinase inhibitor 1A |
-3.25 |
-2.89 |
-3.47 |
|
NUTF2 |
NM_005796.1 |
nuclear transport factor 2 |
1.25 |
1.25 |
-0.12 |
|
CEBPD |
NM_005195.1 |
CCAAT/enhancer binding protein, delta |
-0.54 |
0.41 |
-0.07 |
|
COL9A3 |
NM_001853.1 |
collagen, type IX, alpha 3 |
2.62 |
2.35 |
2.22 |
|
GLDC |
NM_000170.1 |
glycine dehydrogenase |
5.93 |
3.33 |
2.85 |
|
TGFA |
NM_003236.1 |
transforming growth factor, alpha |
2.44 |
1.54 |
1.43 |
|
GALK2 |
NM_002044.1 |
galactokinase 2 |
0.64 |
1.73 |
-0.39 |
|
ESR1 |
NM_000125.1 |
estrogen receptor 1 |
0.03 |
0.39 |
-0.28 |
|
FMO3 |
NM_006894.2 |
flavin containing monooxygenase 3 |
-1.06 |
-0.49 |
1.22 |
|
AKT1 |
NM_005163.1 |
v-akt murine thymoma viral oncogene homolog 1 |
0.14 |
0.40 |
0.34 |
|
PRPS1 |
D00860.1 |
phosphoribosyl pyrophosphate synthetase subunit I |
1.53 |
0.62 |
-0.04 |
|
RPA3 |
NM_002947.1 |
replication protein A3 |
1.30 |
0.57 |
-0.97 |
|
SLIT2 |
NM_004787.1 |
slit homolog 2 (Drosophila) |
2.81 |
1.64 |
0.51 |
|
HIC |
AF054589.1 |
HIC protein isoform p40 and HIC protein isoform p32 |
0.70 |
1.83 |
-0.22 |
|
HSA275986 |
NM_018403.1 |
transcription factor SMIF |
1.51 |
1.41 |
-0.06 |
|
TFCP2L1 |
NM_014553.1 |
transcription factor CP2-like 1 |
-1.55 |
-1.23 |
-0.66 |
|
PPIE |
NM_006112.1 |
peptidylprolyl isomerase E (cyclophilin E) |
0.00 |
-0.29 |
-1.10 |
|
FLJ14800 |
NM_032840.1 |
hypothetical protein FLJ14800 |
0.97 |
1.41 |
1.20 |
|
MGC24039 |
AL137364.1 |
cDNA DKFZp434E0626 |
2.70 |
1.92 |
2.29 |
|
USF1 |
X55666.1 |
late upstream transcription factor |
2.18 |
0.81 |
-0.86 |
|
B4GALT7 |
NM_007255.1 |
xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 |
0.45 |
-0.41 |
-0.44 |
|
|
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|
Shippy et al. BMC Genomics 2004 5:61 doi:10.1186/1471-2164-5-61 |
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