Research article
Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations
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* Corresponding author: Timothy J Sendera timothy.sendera@ge.com
1 GE Heathcare (formerly Amersham Biosciences) Chandler, Arizona 85248, USA
2 Microarray Shared Service, Arizona Cancer Center, Tucson, Arizona 85724, USA
3 Child Study Center, Yale University School of Medicine, New Haven, Connecticut 06510, USA
BMC Genomics 2004, 5:61 doi:10.1186/1471-2164-5-61
Published: 2 September 2004Additional files
Additional File 1:
This file contains gene names, sample designations, CT values for triplicates, mean CT values, median CT values, standard deviation of replicates, and coefficient of variation of replicates for each gene evaluated by qrtPCR.
Format: XLS Size: 22KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 2:
This file contains gene names, oligonucleotide sequences, and oligonucleotide type (FORWARD PRIMER, HYB OLIGO, and REVERSE PRIMER) for each gene evaluated by qrtPCR.
Format: XLS Size: 19KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 3:
This file contains gene names, descriptions, GenBank accessions, log2 ratios (qrtPCR, CodeLink, and GeneChip), CodeLink probe names, and GeneChip probe set names for each gene examined by all three technologies.
Format: XLS Size: 18KB Download file
This file can be viewed with: Microsoft Excel Viewer