Table 4

Top 20 contigs with the most assembled ESTs.

Contig ID

# ESTs

Best Human Match

E-value


MexCluster_4615_Contig1

415

(NM_000519) delta globin

E-39

MexCluster_600_Contig1

354

(NM_182985) ring finger protein 36 isoform a

E-110

MexCluster_6279_Contig1

337

(NM_000559) A-gamma globin

E-32

MexCluster_10867_Contig1

320

(NM_000558) alpha 1 globin

E-38

MexCluster_5357_Contig1

307

(NM_000558) alpha 1 globin

E-37

MexCluster_9285_Contig3

285

(NM_001614) actin, gamma 1 propeptide

0

MexCluster_7987_Contig3

252

(NM_001402) eukaryotic translation elongation f1

0

MexCluster_9285_Contig1

240

(NM_001101) beta actin; beta cytoskeletal actin

0

MexCluster_9279_Contig3

218

(NM_000223) keratin 12

E-113

MexCluster_11203_Contig1

181

(NM_002032) ferritin, heavy polypeptide 1

E-70

MexCluster_8737_Contig2

152

(NM_058242) keratin 6C

E-131

MexCluster_3193_Contig1

145

(NM_004499) heterogeneous nuclear ribonucleoprotein

E-90

MexCluster_8737_Contig7

134

(NM_058242) keratin 6C

E-131

MexCluster_5005_Contig3

132

(NM_031263) heterogeneous nuclear ribonucleoprotein

E-124

MexCluster_6225_Contig1

125

(NM_001152) solute carrier family 25, member 5

E-151

MexCluster_1066_Contig1

122

[31015660] IMAGE:6953586

E-16

MexCluster_8737_Contig4

114

(NM_058242) keratin 6C; keratin, epidermal type II

E-132

MexCluster_8187_Contig2

113

(NM_005507) cofilin 1 (non-muscle)

E-65

MexCluster_2761_Contig1

109

(NM_001961) eukaryotic translation elongation factor2

0

MexCluster_9187_Contig1

105

(NM_007355) heat shock 90 kDa protein 1, beta

0

A. t. tigrinum

TigCluster_6298_Contig1

654

(NM_000519) delta globin

E-38

TigCluster_10099_Contig2

193

(NM_001614) actin, gamma 1 propeptide

0

TigCluster_6470_Contig1

167

(NM_000558) alpha 1 globin

E-39

TigCluster_9728_Contig2

142

(NM_000477) albumin precursor

E-140

TigCluster_6594_Contig1

117

(NM_001402) eukaryotic translation elongation f1

0

TigCluster_5960_Contig1

91

(NM_001101) beta actin; beta cytoskeletal actin

0

TigCluster_7383_Contig1

77

(NM_001614) actin, gamma 1 propeptide

0

TigCluster_6645_Contig1

76

(NM_001063) transferrin

0

TigCluster_7226_Contig4

74

(NM_006009) tubulin, alpha 3

E-160

TigCluster_7191_Contig1

67

(NM_019016) keratin 24

E-89

TigCluster_10121_Contig1

64

(NM_005141) fibrinogen, beta chain preproprotein

0

TigCluster_6705_Contig1

63

(NM_000558) alpha 1 globin

E-39

TigCluster_7854_Contig1

62

(NM_021870) fibrinogen, gamma chain isoform

E-121

TigCluster_6139_Contig1

52

(NM_001404) eukaryotic translation elongation f1

0

TigCluster_7226_Contig2

51

(NM_006009) tubulin, alpha 3

0

TigCluster_10231_Contig1

44

(NM_003018) surfactant, pulmonary-associated prot.

E-08

TigCluster_6619_Contig1

36

(NM_000041) apolipoprotein E

E-38

TigCluster_7232_Contig2

35

(NM_003651) cold shock domain protein A

E-46

TigCluster_5768_Contig1

34

(NM_003380) vimentin

E-177

TigCluster_9784_Contig3

32

|XP_218445.1| similar to RIKEN cDNA 1810065E05

E-15


Putta et al. BMC Genomics 2004 5:54   doi:10.1186/1471-2164-5-54

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