BMC Genomics

official impact factor 4.21

Open Access

Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray

Susan CP Renn, Nadia Aubin-Horth* and Hans A Hofmann

BMC Genomics 2004, 5:42 doi:10.1186/1471-2164-5-42

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Proceedings   Open Access

Fold change and p-value cutoffs significantly alter microarray interpretations

Mark R Dalman, Anthony Deeter, Gayathri Nimishakavi, Zhong-Hui Duan BMC Bioinformatics 2012, 13(Suppl 2):S11 (13 March 2012)

Research article   Open Access

Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco

Erik Alexandersson, John VW Becker, Dan Jacobson, Eric Nguema-Ona, Cobus Steyn, Katherine J Denby, Melané A Vivier BMC Research Notes 2011, 4:493 (13 November 2011)

Research article   Open Access

Normalization and centering of array-based heterologous genome hybridization based on divergent control probes

Brian J Darby, Kenneth L Jones, David Wheeler, Michael A Herman BMC Bioinformatics 2011, 12:183 (21 May 2011)

Research article   Open Access Highly Accessed

Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms

Dennis Janz, Katja Behnke, Jörg-Peter Schnitzler, Basem Kanawati, Philippe Schmitt-Kopplin, Andrea Polle BMC Plant Biology 2010, 10:150 (17 July 2010)

Methodology article   Open Access Highly Accessed

Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays

Cyril Degletagne, Céline Keime, Benjamin Rey, Marc de Dinechin, Fabien Forcheron, Paul Chuchana, Pierre Jouventin, Christian Gautier, Claude Duchamp BMC Genomics 2010, 11:344 (31 May 2010)

Research article   Open Access

Differential transcript expression between the microfilariae of the filarial nematodes, Brugia malayi and B. pahangi

Michael M Kariuki, Leonard B Hearne, Brenda T Beerntsen BMC Genomics 2010, 11:225 (7 April 2010)

Opinion   Free Highly Accessed

Promoter architecture and the evolvability of gene expression

Itay Tirosh, Naama Barkai, Kevin J Verstrepen Journal of Biology 2009, 8:95 (14 December 2009)

Major evolutionary change depends on changes in gene expression. Itay Tirosh and colleagues review recent research on the influence of promoter architecture and mutations in regulatory proteins on divergent expression patterns and suggest what is required for evolvability.

Research article   Open Access

Genome-wide screen for temperature-regulated genes of the obligate intracellular bacterium, Rickettsia typhi

Sheila M Dreher-Lesnick, Shane M Ceraul, M Sayeedur Rahman, Abdu F Azad BMC Microbiology 2008, 8:61 (15 April 2008)

Research article   Open Access Highly Accessed

The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

Kirstin Replogle, Arthur P Arnold, Gregory F Ball, Mark Band, Staffan Bensch, Eliot A Brenowitz, Shu Dong, Jenny Drnevich, Margaret Ferris, Julia M George, George Gong, Dennis Hasselquist, Alvaro G Hernandez, Ryan Kim, Harris A Lewin, Lei Liu, Peter V Lovell, Claudio V Mello, Sara Naurin, Sandra Rodriguez-Zas, Jyothi Thimmapuram, Juli Wade, David F Clayton BMC Genomics 2008, 9:131 (18 March 2008)

The Songbird Neurogenomics initiative (SoNG) provides a genomic database, a set of genomic tools and also a mechanism for community collaboration to enhance research linking the genomics, evolution, neuroscience and behavior of songbirds.

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Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs

Walter Salzburger, Susan CP Renn, Dirk Steinke, Ingo Braasch, Hans A Hofmann, Axel Meyer BMC Genomics 2008, 9:96 (25 February 2008)

Research article   Open Access

A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution

Patrick D Danley, Sean P Mullen, Fenglong Liu, Vishvanath Nene, John Quackenbush, Kerry L Shaw BMC Genomics 2007, 8:109 (25 April 2007)

Research article   Open Access

Thermal evolution of gene expression profiles in Drosophila subobscura

Hafid Laayouni, Francisco García-Franco, Blanca E Chávez-Sandoval, Vincenzo Trotta, Sergi Beltran, Montserrat Corominas, Mauro Santos BMC Evolutionary Biology 2007, 7:42 (19 March 2007)

Methodology article   Open Access

Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results

Carmiya Bar-Or, Meira Bar-Eyal, Tali Z Gal, Yoram Kapulnik, Henryk Czosnek, Hinanit Koltai BMC Genomics 2006, 7:110 (8 May 2006)

Research article   Open Access Highly Accessed

Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts

Willem Rensink, Yuandan Lee, Jia Liu, Stacy Iobst, Shu Ouyang, C Robin Buell BMC Genomics 2005, 6:124 (14 September 2005)

Examination of all available expressed sequence tags and expressed transcripts for six Solanceae species confirms that there is a high level of sequence conservation across the family and identifies some transcripts that may be unique to the Solanceae.

Research article   Open Access

A BAC-based physical map of the Nile tilapia genome

Takayuki Katagiri, Celeste Kidd, Elizabeth Tomasino, Jesse T Davis, Cassandra Wishon, Justin E Stern, Karen L Carleton, Aimee E Howe, Thomas D Kocher BMC Genomics 2005, 6:89 (9 June 2005)

The completion of a BAC-based physical map, based on 3500 contigs, of the tilapia genome will enable more advanced genomic studies of this economically important cichlid fish to accelerate.

Research   Open Access

Differential gene expression in recombinant Pichia pastoris analysed by heterologous DNA microarray hybridisation

Michael Sauer, Paola Branduardi, Brigitte Gasser, Minoska Valli, Michael Maurer, Danilo Porro, Diethard Mattanovich Microbial Cell Factories 2004, 3:17 (20 December 2004)