Table 2 |
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|
Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile. |
|||||
|
Halobaculum gomorrense |
|||||
|
Hg11_0191 |
3 |
1384,rad3a, yvoF |
Hg2_0160 |
2 |
rpl30p,rps5p |
|
Hg12_0134 |
3 |
1564,1561,1562 |
Hg1_0175 |
2 |
2149,etlB |
|
Hg8_0102 |
3 |
rpI1 4,prpl24,prps4e |
Hg12_0110 |
2 |
cbiJ,cbiC |
|
Hg12_0124 |
3 |
642,nolC,nuoL |
Hg9_0124 |
2 |
1087,1086 |
|
Hg1_0132 |
2 |
rps13p,rps4p |
Hg6_0157 |
2 |
ribG,1257 |
|
Hg13_0114 |
2 |
rpl24e,ndk |
Hg9_0157 |
2 |
rpl13p,rps9p |
|
Hg1_0114 |
2 |
5062,5063 |
Hg12_0125 |
2 |
ilVE1,388 |
|
Hg2_0136 |
2 |
2160,2162 |
Hg10_0188 |
2 |
cobH,cbiH |
|
Hg8_0104 |
2 |
359,357 |
Hg8_0128 |
2 |
5191,5189 |
|
Hg3_0132 |
2 |
2089,2091 |
Hg1_0174 |
2 |
rpl32e,rpl6p |
|
Hg13_0174 |
2 |
255,256 |
Hg1_0168 |
2 |
417,419 |
|
Hg12_0169 |
2 |
gpdB,gpdA2 |
Hg7_0133 |
2 |
cat,maoC1 |
|
Hg13_0179 |
2 |
gmd,graD3 |
Hg11_0101 |
2 |
sus,trn30 |
|
Hg5_0173 |
2 |
1641,1642 |
Hg6 0161 |
2 |
2316,cbiO1 |
|
Hg12_0172 |
2 |
uroM,hem3 |
|||
|
Hg10_0169 |
2 |
cbiL,cbiF |
Natrialba asiatica |
||
|
Hg3_0178 |
2 |
riml,can |
Na5_0165 |
3 |
rps3p,1699,rpl29p |
|
Hg8_0132 |
2 |
1519,1518 |
Na7_0184 |
2 |
nolD,ndhG4 |
|
Hg1_0123 |
2 |
tfeA,755 |
Na11_0183 |
2 |
fbp,686 |
|
Hg7_0108 |
2 |
rpl13p, rpl18e |
Na6_0131 |
2 |
2534,2535 |
|
Hg8_0147 |
2 |
trn24,1390 |
Na1_0196 |
2 |
1530,mmdA |
|
Hg10_0108 |
2 |
801,trn12 |
Na3_0196 |
2 |
yusM,2121 |
|
Hg12_0123 |
2 |
rpl19e,rpl18p |
Na8_0152 |
2 |
1900,1901 |
|
Hg5_0122 |
2 |
fbp,683 |
Na1_0112 |
2 |
po/B1,520 |
|
Hg13_0193 |
2 |
2637,bchP |
Na11_0168 |
2 |
rad24c,2371 |
|
Hg5_0165 |
2 |
2098,trn36 |
Na2_0190 |
2 |
fbp,686 |
|
Hg9_0123 |
2 |
sus,trn30 |
Na1_0154 |
2 |
hUtG,hutl |
|
Hg8_0119 |
2 |
1429,1431 |
Na4_0122 |
2 |
hpyA,aup |
|
Hg12_0105 |
2 |
gatA,gatC |
Na6_0176 |
2 |
6070,6071 |
|
Hg3_0115 |
2 |
gapB,hsp2 |
Na4_0158 |
2 |
rp/32e,rpl19e |
|
Hg3_0187 |
2 |
pyrE1,gcd |
Na5_0119 |
2 |
1934,ftsZ3 |
|
Hg10_0181 |
2 |
854,857 |
Na10_0123 |
2 |
1845,ansA |
|
Hg13_0115 |
2 |
5069,5071 |
Na8_0119 |
2 |
1296,1297 |
|
Hg5_0113 |
2 |
hpyA,aup |
Na3_0134 |
2 |
mamA,mamB |
|
Hg8_0146 |
2 |
1783,panF |
Na1_0138 |
2 |
2474,2475 |
|
Hg9_0194 |
2 |
1235,1236 |
Na10_0113 |
2 |
htlB,cmk |
|
Hg6_0102 |
2 |
traB,875 |
Na12_0184 |
2 |
220,219 |
|
Hg9_0115 |
2 |
256,258 |
Na1_0125 |
2 |
525,527 |
|
Hg10_0131 |
2 |
1823,moaB |
Na11_0176 |
2 |
404,405 |
|
Hg2_0106 |
2 |
alkK,gdhB |
Na12_0110 |
2 |
dtd,247 |
|
Hg11_0194 |
2 |
2205,pmu1 |
Na8_0103 |
2 |
2369,rad24b |
|
Hg5_0170 |
2 |
glyA,folD |
Na9_0165 |
2 |
2306,2307 |
|
Hg2_0125 |
2 |
purK,purE |
Na11_0175 |
2 |
rps6e,2515 |
|
Hg4_0125 |
2 |
2098,trn36 |
Na4_0146 |
2 |
gun,purM |
|
Hg8_0107 |
2 |
rrlA,rrlB |
Na5_0164 |
2 |
296,pnm |
|
Hg2_0171 |
2 |
ndhG1,nolB |
Na9 0164 |
2 |
rnh,1982 |
|
|
|||||
|
Halorubrum lacusprofundi |
Haloarcula marismortui |
||||
|
HI10_0165 |
3 |
rps14p,rpl6p,rps8p |
Hm10_0182 |
3 |
767,768,769 |
|
HI4_0114 |
2 |
5166,5167 |
Hm11_0113 |
3 |
1558,1559,cbiH |
|
HI6_0133 |
2 |
rad24c,2371 |
Hm8_0149 |
2 |
trkA4,phoT3 |
|
HI12_0110 |
2 |
rps5p,rpl18p |
Hm12_0196 |
2 |
gpdB,gpdA2 |
|
HI11_0135 |
2 |
943,945 |
Hm7_0109 |
2 |
mal,mamB |
|
HI5_0115 |
2 |
alkK,gdhB |
Hm8_0151 |
2 |
hpyA,rpa |
|
HI11_0152 |
2 |
alaS,2282 |
Hm4_0135 |
2 |
2555,trn44 |
|
HI7_0101 |
2 |
pri,1471 |
Hm5_0163 |
2 |
1475,1476 |
|
HI11_0159 |
2 |
981,982 |
Hm4_0159 |
2 |
2515,2516 |
|
HI2_0111 |
2 |
6060,6061 |
Hm1_0167 |
2 |
576,578 |
|
HI2_0107 |
2 |
pmm,2277 |
Hm6_0177 |
2 |
6434,6437 |
|
HI7_0142 |
2 |
rpl3p,1688 |
Hm10_0123 |
2 |
trpE2,383 |
|
HI5_0125 |
2 |
trp1,124 |
Hm11_0186 |
2 |
2024,yyal |
|
HI2_0193 |
2 |
rps4p,rps11p |
Hm1_0106 |
2 |
rad3a,1382 |
|
HI8_0104 |
2 |
2333, cysG |
Hm10_0192 |
2 |
sop1 ,htr1 |
|
HI7_0124 |
2 |
576,578 |
Hm9_0134 |
2 |
mal, mamB |
|
HI9_0183 |
2 |
1613,mvaB |
Hm8_0125 |
2 |
1845,ansA |
|
HI12_0125 |
2 |
5131,5132 |
Hm1_0150 |
2 |
2369,rad24b |
|
HI7_0158 |
2 |
2316,cbiO1 |
Hm4_0112 |
2 |
1823,moaB |
|
HI10_0161 |
2 |
citE.,gdhA1 |
Hm6_0130 |
2 |
533,534 |
|
HI2_0112 |
2 |
2241,rfcC |
Hm6_0112 |
2 |
1823,moaB |
|
HI5_0112 |
2 |
2645, vacB |
Hm6_0149 |
2 |
alkK,gdhB |
|
HI9_0130 |
2 |
pgi,1993 |
Hm1_0165 |
2 |
266,267 |
|
HI5_0127 |
2 |
1578,1580 |
Hm11_0158 |
2 |
noxA,1806 |
|
HI6_0173 |
2 |
6198,6197 |
Hm7_0164 |
2 |
dsa,lpdA |
|
HI11_0150 |
2 |
2089, trm1 |
Hm5_0174 |
2 |
2160,2162 |
|
HI11_0160 |
2 |
981,982 |
Hm11_0116 |
2 |
mal,mamB |
|
HI5_0134 |
2 |
trn41,rrs |
Hm12_0116 |
2 |
gpdB,gpdA2 |
|
HI1_0162 |
2 |
trn42,rrlB |
Hm8_0137 |
2 |
dsa,lpdA |
|
HI6_0103 |
2 |
1672,1670 |
Hm1_0104 |
2 |
1296,1297 |
|
HI6_0131 |
2 |
pri,1468 |
Hm12_0184 |
2 |
rps6e,2515 |
|
HI4_0176 |
2 |
trpB,trpC |
Hm9_0104 |
2 |
758,759 |
|
HI10_0168 |
2 |
rpl14p,rps17p |
Hm11_0176 |
2 |
ndhG1,ndhG5 |
|
HI2_0170 |
2 |
2149,ettB |
Hm11_0135 |
2 |
trn46,rps10p |
|
HI9_0170 |
2 |
ugpE,ugpC |
Hm4_0154 |
2 |
yvrO,3 |
|
HI5_0149 |
2 |
rpl6p,rps8p |
Hm4_0136 |
2 |
2370,rad24b |
|
HI12_0187 |
2 |
2581,2582 |
Hm2_0113 |
2 |
hutG,hutl |
|
HI6_0121 |
2 |
ndhG1,ndhG5 |
Hm12_0152 |
2 |
asnA,865 |
|
Hm8_0109 |
2 |
1558,cdiH |
|||
|
Hm7_0186 |
2 |
230,231 |
|||
|
Hm8_0134 |
2 |
361,nfi |
|||
|
Hm8_0180 |
2 |
rpl14p,rpl24p |
|||
|
Hm8_0177 |
2 |
711,713 |
|||
|
|
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|
Goo et al. BMC Genomics 2004 5:3 doi:10.1186/1471-2164-5-3 |
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