Table 2 |
|
|
Genomotyping results of N. gonorrhoeae strain FA1090 versus N. gonorrhoeae strain FA19. |
|
|
Gene probes hybridizing to FA1090 but not FA19 |
|
|
|
|
|
Genes known to be associated with divergence: |
Lack of hybridization may be due to: |
|
XNG0049 (pilC1) |
divergence in FA19 pilC sequence |
|
XNG0211 (hypothetical) |
maf-associated divergence |
|
XNG0212 (hypothetical) |
maf-associated divergence |
|
XNG0213 (hypothetical) |
maf-associated divergence |
|
XNG1848 (hypothetical) |
maf-associated divergence |
|
XNG0458 (hypothetical) |
prophage region-associated divergence |
|
XNG0459 (regulator) |
prophage region-associated divergence |
|
XNG0460 (hypothetical) |
prophage region-associated divergence |
|
XNG0461 (regulator) |
prophage region-associated divergence |
|
XNG0462 (hypothetical) |
prophage region-associated divergence |
|
XNG1006 (hypothetical) |
prophage region-associated divergence |
|
XNG1509 (hypothetical) |
prophage region-associated divergence |
|
Genes associated with strain-specific regions: |
Associated strain-specific region: |
|
XNG0438 (hypothetical) |
pilin-AzlC MME |
|
XNG0741 (hypothetical) |
ung-hypo MME |
|
XNG0528 (hypothetical) |
hypo-aspA MME |
|
XNG0529 (hypothetical) |
hypo-aspA MME |
|
XNG1114 (hypothetical) |
uvrA-hypo MME |
|
XNG1115 (methylase) |
uvrA-hypo MME |
|
XNG1441 (hypothetical) |
nadC-xthA MME |
|
|
|
|
Gene probes hybridizing to FA19 but not FA1090 |
|
|
|
|
|
Genes known to be associated with divergence |
Hybridization to non-FA1090 probes may be due to: |
|
NMB1541 (lbpB) |
lbpB is known to be dead in FA1090 (AF072890) |
|
NMA0036 (hypothetical) |
maf-associated divergence |
|
NMB2109 (hypothetical) |
maf-associated divergence |
|
NMB2110 (hypothetical) |
maf-associated divergence |
|
NMA1360 (hypothetical) |
the presence of a sequenced gene fragment in FA19 |
|
NMB1119 (hypothetical) |
prophage region-associated divergence |
|
NMB1120 (hypothetical) |
prophage region-associated divergence |
|
GCJDS60 (suppressor) |
prophage region-associated divergence |
|
GCJDS61 (regulator) |
prophage region-associated divergence |
|
Genes associated with strain-specific regions: |
Associated strain-specific region: |
|
NMA2121 (hypothetical) |
hypo-hypo MME |
|
59 Gonococcal Genetic Island genes |
ung-hypo MME |
|
|
|
|
Snyder et al. BMC Genomics 2004 5:23 doi:10.1186/1471-2164-5-23 |
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