BMC Genomics

official impact factor 4.21

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Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data

Rachel Lyne, Gavin Burns, Juan Mata, Chris J Penkett, Gabriella Rustici, Dongrong Chen, Cordelia Langford, David Vetrie and Jürg Bähler*

BMC Genomics 2003, 4:27 doi:10.1186/1471-2164-4-27

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Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

Daniel H Lackner, Michael W Schmidt, Shuangding Wu, Dieter A Wolf, Jürg Bähler Genome Biology 2012, 13:R25 (18 April 2012)

Changes in transcription and translation are measured in fission yeast exposed to different stresses to elucidate layers of gene expression control

Research   Open Access

A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2 in chromosome end protection

Amanda Greenall, Guiyuan Lei, Daniel C Swan, Katherine James, Liming Wang, Heiko Peters, Anil Wipat, Darren J Wilkinson, David Lydall Genome Biology 2008, 9:R146 (1 October 2008)

NAD+ metabolism may be linked to telomere end protection in yeast.

Research   Open Access

Transcriptional regulatory network for sexual differentiation in fission yeast

Juan Mata, Anna Wilbrey, Jürg Bähler Genome Biology 2007, 8:R217 (10 October 2007)

Microarray analysis of the transcriptome of fission yeast after genetic perturbation of 6 genes known to have a role in sexual differentiation reveals insights into the regulatory principles controlling the gene expression program driving this process.

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Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study

Gabriella Rustici, Harm van Bakel, Daniel H Lackner, Frank C Holstege, Cisca Wijmenga, Jürg Bähler, Alvis Brazma Genome Biology 2007, 8:R73 (3 May 2007)

Analysis of genome-wide responses to changing copper and iron levels in budding and fission yeast reveals conservation of only a small core set of genes and remarkable differences in the responses of the two yeasts to excess copper.

Research article   Open Access

Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile

Paolo Fardin, Stefano Moretti, Barbara Biasotti, Annamaria Ricciardi, Stefano Bonassi, Luigi Varesio BMC Genomics 2007, 8:17 (17 January 2007)

Research article   Open Access

Genomewide identification of pheromone-targeted transcription in fission yeast

Yongtao Xue-Franzén, Søren Kjærulff, Christian Holmberg, Anthony Wright, Olaf Nielsen BMC Genomics 2006, 7:303 (30 November 2006)

The mating pheromone response in fission yeast involves newly identified transcripts unique to either haploid M or P cells, and the surprising activation of genes required beyond mating and meiosis entry for meiotic recombination.

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Conversion of cDNA differential display results (DDRT-PCR) into quantitative transcription profiles

Balakrishnan Venkatesh, Ursula Hettwer, Birger Koopmann, Petr Karlovsky BMC Genomics 2005, 6:51 (5 April 2005)

Research   Open Access

Global expression changes resulting from loss of telomeric DNA in fission yeast

Jeffrey G Mandell, Jürg Bähler, Thomas A Volpe, Robert A Martienssen, Thomas R Cech Genome Biology 2004, 6:R1 (15 December 2004)

Gene expression profiling of the response of Schizosaccharomyces pombe cells to loss of the catalytic subunit of telomerase (trt1+) identified two waves of altered gene expression and a continued up-regulation of Core Environmental stress Response (CESR) genes.