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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Erik Alexandersson
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Research article
 
TGF- induces the expression of SAP30L, a novel nuclear protein
Katri Lindfors, Keijo M Viiri, Marjo Niittynen, Taisto YK Heinonen, Markku M ki, Heikki Kainulainen
BMC Genomics 2003, 4:53 (18December2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila
Javier Costas, Cristina P Vieira, Fernando Casares, Jorge Vieira
BMC Genomics 2003, 4:52 (16December2003)
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Research article
Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
Jorge Vald s, Felipe Veloso, Eugenia Jedlicki, David Holmes
BMC Genomics 2003, 4:51 (15December2003)
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Research article
The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and function
Steven van Nocker, Philip Ludwig
BMC Genomics 2003, 4:50 (12December2003)
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Research article
Relationship between gene co-expression and probe localization on microarray slides
Yuval Kluger, Haiyuan Yu, Jiang Qian, Mark Gerstein
BMC Genomics 2003, 4:49 (10December2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
Michal A Kurowski, Ashok S Bhagwat, Grzegorz Papaj, Janusz M Bujnicki
BMC Genomics 2003, 4:48 (10December2003)
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Research article
Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins
Martin Kollmar, Gernot Gl ckner
BMC Genomics 2003, 4:47 (27November2003)
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Research article
Microarray analysis of tumor necrosis factor  induced gene expression in U373 human glioblastoma cells
Jens Schwamborn, Antje Lindecke, Margitta Elvers, Volker Horejschi, Martin Kerick, Mehran Rafigh, Julia Pfeiffer, Maria Pr llage, Barbara Kaltschmidt, Christian Kaltschmidt
BMC Genomics 2003, 4:46 (25November2003)
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Research article
In silico and in vivo analysis reveal a novel gene in Saccharomyces cerevisiae trehalose metabolism
Joelma F De Mesquita, Anita D Panek, Pedro S de Araujo
BMC Genomics 2003, 4:45 (13November2003)
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Methodology article
Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations
Andrej-Nikolai Spiess, Nadine Mueller, Richard Ivell
BMC Genomics 2003, 4:44 (10November2003)
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Research article
Expression of alternatively spliced isoforms of human Sp7 in osteoblast-like cells
Maria-athina Milona, Julie E Gough, Alasdair J Edgar
BMC Genomics 2003, 4:43 (7November2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Database
PCAS  a precomputed proteome annotation database resource
Yong Zhang, Yanbin Yin, Yunjia Chen, Ge Gao, Peng Yu, Jingchu Luo, Ying Jiang
BMC Genomics 2003, 4:42 (1November2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays
Jeffrey P Townsend
BMC Genomics 2003, 4:41 (2October2003)
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Research article
Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project
Paula Fern ndez, Norma Paniego, Sergio Lew, H Esteban Hopp, Ruth A Heinz
BMC Genomics 2003, 4:40 (30September2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
The interrelationship between DRIM gene expression and cytogenetic and phenotypic characteristics in human breast tumor cell lines
Steve Goodison, Carrie Viars, Maren Grazzini, Virginia Urquidi
BMC Genomics 2003, 4:39 (22September2003)
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Research article
A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization
Emmanuel Talla, Fredj Tekaia, Laurent Brino, Bernard Dujon
BMC Genomics 2003, 4:38 (22September2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
An improved probability mapping approach to assess genome mosaicism
Olga Zhaxybayeva, J Peter Gogarten
BMC Genomics 2003, 4:37 (15September2003)
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Methodology article
Increased retention of functional fusions to toxic genes in new two-hybrid libraries of the E. coli strain MG1655 and B. subtilis strain 168 genomes, prepared without passaging through E. coli
Steven A Haney, David Keeney, Lei Chen, Soraya Moghazeh, Steve Projan, Beth Rasmussen
BMC Genomics 2003, 4:36 (10September2003)
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Research article
The Anopheles gambiae glutathione transferase supergene family: annotation, phylogeny and expression profiles
Yunchuan Ding, Federica Ortelli, Louise C Rossiter, Janet Hemingway, Hilary Ranson
BMC Genomics 2003, 4:35 (13August2003)
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Research article
Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria
Vivek Anantharaman, L Aravind
BMC Genomics 2003, 4:34 (12August2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Identification of a novel Drosophila gene, beltless, using injectable embryonic and adult RNA interference (RNAi)
Svetlana Dzitoyeva, Nikola Dimitrijevic, Hari Manev
BMC Genomics 2003, 4:33 (12August2003)
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Research article
Molecular cloning, genomic characterization and over-expression of a novel gene, XRRA1, identified from human colorectal cancer cell HCT116Clone2_XRR and macaque testis
Felix M Mesak, Naoki Osada, Katsuyuki Hashimoto, Qing Y Liu, Cheng E Ng
BMC Genomics 2003, 4:32 (9August2003)
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Methodology article
Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases
Lukasz Huminiecki, Andrew T Lloyd, Kenneth H Wolfe
BMC Genomics 2003, 4:31 (29July2003)
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Research article
Analysis of the conservation of synteny between Fugu and human chromosome 12
Alexandre Montpetit, Michael D Wilson, Mario Chevrette, Ben F Koop, Daniel Sinnett
BMC Genomics 2003, 4:30 (23July2003)
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Research article
Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: The class II cytokine receptors and their ligands in mammals and fish
Georges Lutfalla, Hugues Roest Crollius, Nicole Stange-thomann, Olivier Jaillon, Knud Mogensen, Dani le Monneron
BMC Genomics 2003, 4:29 (17July2003)
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Methodology article
Sensitivity and fidelity of DNA microarray improved with integration of Amplified Differential Gene Expression (ADGE)
Zhijian J Chen, Laurent Gat, Warren Davis, Kristina E Ile, Kenneth D Tew
BMC Genomics 2003, 4:28 (14July2003)
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Research article
Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data
Rachel Lyne, Gavin Burns, Juan Mata, Chris J Penkett, Gabriella Rustici, Dongrong Chen, Cordelia Langford, David Vetrie, Jrg Bhler
BMC Genomics 2003, 4:27 (10July2003)
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Research article
Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data
Abraham Anderson, Matthew Hudson, Wenqiong Chen, Tong Zhu
BMC Genomics 2003, 4:26 (10July2003)
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Research article
A transcription map of the 6p22.3 reading disability locus identifying candidate genes
Eric R Londin, Haiying Meng, Jeffrey R Gruen
BMC Genomics 2003, 4:25 (30June2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins
Gabor Keresztes, Hideki Mutai, Stefan Heller
BMC Genomics 2003, 4:24 (17June2003)
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Methodology article
The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy
Bradley L Postier, Hong-Liang Wang, Abhay Singh, Lori Impson, Heather L Andrews, Jessica Klahn, Hong Li, George Risinger, David Pesta, Michael Deyholos, David W Galbraith, Louis A Sherman, Robert L Burnap
BMC Genomics 2003, 4:23 (12June2003)
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Research article
Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs
Sreedhar Oduru, Janee L Campbell, SriTulasi Karri, William J Hendry, Shafiq A Khan, Simon C Williams
BMC Genomics 2003, 4:22 (3June2003)
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Methodology article
High accuracy genotyping directly from genomic DNA using a rolling circle amplification based assay
Osama A Alsmadi, Carole J Bornarth, Wanmin Song, Michele Wisniewski, Jing Du, Joel P Brockman, A Fawad Faruqi, Seiyu Hosono, Zhenyu Sun, Yuefen Du, Xiaohong Wu, Michael Egholm, Patricio Abarz a, Roger S Lasken, Mark D Driscoll
BMC Genomics 2003, 4:21 (30May2003)
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Research article
A high resolution physical and RH map of pig chromosome 6q1.2 and comparative analysis with human chromosome 19q13.1
Flvia Martins-Wess, Denis Milan, Cord Drgemller, Rodja Vo-Nemitz, Bertram Brenig, Annie Robic, Martine Yerle, Tosso Leeb
BMC Genomics 2003, 4:20 (13May2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
Development and validation of a T7 based linear amplification for genomic DNA
Chih Long Liu, Stuart L Schreiber, Bradley E Bernstein
BMC Genomics 2003, 4:19 (9May2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
The gene structure and expression of human ABHD1: overlapping polyadenylation signal sequence with Sec12
Alasdair J Edgar
BMC Genomics 2003, 4:18 (7May2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Wavelet to predict bacterial ori and ter: a tendency towards a physical balance
Jiuzhou Song, Antony Ware, Shu-Lin Liu
BMC Genomics 2003, 4:17 (5May2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Methodology article
A general cloning system to selectively isolate any eukaryotic or prokaryotic genomic region in yeast
Vladimir N Noskov, Natalay Kouprina, Sun-Hee Leem, Ilia Ouspenski, J Carl Barrett, Vladimir Larionov
BMC Genomics 2003, 4:16 (29April2003)
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Research article
Partial duplication of the APBA2 gene in chromosome 15q13 corresponds to duplicon structures
James S Sutcliffe, Michael K Han, Taneem Amin, Robert A Kesterson, Erika L Nurmi
BMC Genomics 2003, 4:15 (29April2003)
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Research article
Unusual misregulation of RNA splicing caused by insertion of a transposable element into the T (Brachyury) locus
Sarah N Goldin, Virginia E Papaioannou
BMC Genomics 2003, 4:14 (17April2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
TOX defines a conserved subfamily of HMG-box proteins
Emmett O'Flaherty, Jonathan Kaye
BMC Genomics 2003, 4:13 (2April2003)
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Research article
Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome
Lars Juhl Jensen, Marie Skovgaard, Thomas Sicheritz-Pontn, Merete Kj r J rgensen, Christiane Lundegaard, Corinna Cavan Pedersen, Nanna Petersen, David Ussery
BMC Genomics 2003, 4:12 (2April2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
Research article
Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance
Vigdis Nygaard, Anders Lland, Marit Holden, Mette Langaas, H vard Rue, Fang Liu, Ola Myklebost,  ystein Fodstad, Eivind Hovig, Birgitte Smith-Srensen
BMC Genomics 2003, 4:11 (23March2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome
Tom Coenye, Peter Vandamme
BMC Genomics 2003, 4:10 (17March2003)
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Research article
Refined physical map of the human PAX2/HOX11/NFKB2 cancer gene region at 10q24 and relocalization of the HPV6AI1 viral integration site to 14q13.3-q21.1
Sheryl M Gough, Margaret McDonald, Xiao-Ning Chen, Julie R Korenberg, Antonino Neri, Tomas Kahn, Michael R Eccles, Christine M Morris
BMC Genomics 2003, 4:9 (3March2003)
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Research article
Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles
Qianfan Bai, Christine McGillivray, Nuno da Costa, Saffron Dornan, Gary Evans, Michael James Stear, Kin-Chow Chang
BMC Genomics 2003, 4:8 (1March2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Sequence determinants in human polyadenylation site selection
Matthieu Legendre, Daniel Gautheret
BMC Genomics 2003, 4:7 (25February2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
STRP Screening Sets for the human genome at 5 cM density
Nader Ghebranious, David Vaske, Adong Yu, Chengfeng Zhao, Gabor Marth, James L Weber
BMC Genomics 2003, 4:6 (24February2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins
Lakshminarayan M Iyer, Vivek Anantharaman, L Aravind
BMC Genomics 2003, 4:5 (3February2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
Reproducibility of oligonucleotide arrays using small samples
Jeanette N McClintick, Ronald E Jerome, Charles R Nicholson, David W Crabb, Howard J Edenberg
BMC Genomics 2003, 4:4 (30January2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Research article
In silico characterisation and chromosomal localisation of human RRH (peropsin) implications for opsin evolution
James Bellingham, Dominic J Wells, Russell G Foster
BMC Genomics 2003, 4:3 (24January2003)
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Research article
Gene trap mutagenesis of hnRNP A2/B1: a cryptic 3' splice site in the neomycin resistance gene allows continued expression of the disrupted cellular gene
Michael Roshon, James V DeGregori, H Earl Ruley
BMC Genomics 2003, 4:2 (20January2003)
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Research article
Comparative study of methyl-CpG-binding domain proteins
Tim C Roloff, H Hilger Ropers, Ulrike A Nuber
BMC Genomics 2003, 4:1 (16January2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
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