Table 4

List of 17 Sclerotinia-specific effector candidates revealed by pattern and fold recognition searches
Length C-score TM score Analog model Selected analog description
SS1G_00780 115 -3.14 0.610 2PFV S. cerevisiae Exo70 with additional residues to 2.1 Angstrom resolution
SS1G_01817 116 -2.53 0.503 2R5M Crystal Structure of the two MBT repeats from Sex-Comb on Midleg (SCM) in complex with peptide R-(me)K-S
SS1G_03830 155 -4.41 0.460 3GH1 Predicted nucleotide-binding protein from Vibrio cholerae
SS1G_03878 132 -3.79 0.645 1NI3 Schizosaccharomyces pombe YchF GTPase
SS1G_04309 177 -4.63 0.461 2QPD Crystal structure of SusD-like carbohydrate binding protein (YP_001298396.1) from
SS1G_06504 93 -2.38 0.503 4HOI Bacteroides vulgatus ATCC 8482 at 1.70 A resolution
SS1G_07354 129 -3.63 0.589 1UG3 Crystal structure of PAS domain from the mouse EAG1 potassium channel C-terminal portion of human eIF4GI
SS1G_07543 273 -4.27 0.706 2FX5 Pseudomonas mendocina lipase
SS1G_08860 141 -3.96 0.526 1XLY X-ray structure of the RNA-binding protein SHE2p
SS1G_09512 164 -3.65 0.546 3LE0 Lectin Domain of Lectinolysin complexed with Glycerol
SS1G_10915 136 -4.12 0.512 3M1C Crystal structure of the conserved herpesvirus fusion regulator complex gH-gL
SS1G_11461 114 -3.2 0.526 2 HP3 Penicillin-binding protein 2b (PBP-2b) from Streptococcus pneumoniae (strain 5204)
SS1G_12769 88 -2.32 0.585 3S63 Saposin-like protein Na-SLP-1
SS1G_13016 124 -2.76 0.555 3APO ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5
SS1G_13142 131 -4.25 0.506 1DCU Oxidized pea fructose-1,6-bisphosphate phosphatase
SS1G_13235 114 -3.55 0.585 3D3M C-terminal region of Death Associated Protein 5(DAP5)
SS1G_14000 159 -4.43 0.578 2C9K Structure of the functional form of the mosquito larvicidal Cry4Aa toxin from Bacillus thuringiensis at a 2.8-angstrom resolution

C-score is a confidence score for estimating the quality of models predicted by I-TASSER ranging from -5 (low confidence) to 2 (high confidence). TM score is a quality score for the superimposition of 3D models calculated with TM-align with values in [0;1]. A TM-score >0.5 generally corresponds to the same fold in SCOP/CATH.

Guyon et al.

Guyon et al. BMC Genomics 2014 15:336   doi:10.1186/1471-2164-15-336

Open Data