Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

Open Access Highly Accessed Research article

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data

Ségolène Caboche14*, Christophe Audebert24, Yves Lemoine134 and David Hot134

Author Affiliations

1 FRE 3642 Molecular and Cellular Medecine, CNRS, Institut Pasteur de Lille and Univ Lille Nord de France, Lille, France

2 Genes Diffusion, 3595, Route de Tournai, 59501 Douai, France

3 Transcriptomics and Applied Genomics, Center of Infection and Immunity of Lille, Inserm U1019, CNRS UMR8204, Institut Pasteur de Lille, Univ Lille Nord de France, Lille, France

4 PEGASE-Biosciences, Institut Pasteur de Lille, 1 Rue du Professeur Calmette, 59019 Lille, France

For all author emails, please log on.

BMC Genomics 2014, 15:264  doi:10.1186/1471-2164-15-264

Published: 5 April 2014

Additional files

Additional file 1:

Supplementary material. This PDF file contains supplementary data for this paper. Section 1 - Command lines used for each of the tested mappers and for read generation. Section 2 - Description of CuReSim, the customizable read simulator, and CuReSimEval, the program to evaluate the mapping quality. Section 3 - additional figures. Section 4 - presents additional experiments.

Format: PDF Size: 505KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data