Table 1

Genome Comparisons of M. roreri and M. perniciosa
Genome size (bp) Average (G + C)% Total number contigs N50 (bp) Max contig size (bp) Min contig size (bp) Median contig size Total tRNA Avg gene Density Total CDS Avg (G + C) CDS% Maximum CDS size (bp) Median CDS size (bp)
M. roreri 52,334,075 46.88% 3,298 48,134 571,142 367 5,455 670* 0.42185# 17,920 49.55% 15,081 1,023
M. perniciosa 44,661,472 47.81% 3,087 48,096 476,325 500 3,300 550 0.51058# 17,008 49.83% 15,048 1,095

*using tRNAscan default parameters yielded 331 contigs that have tRNA for a total of 670 tRNA’s.

#CDS bases/total genome bases.

Meinhardt et al.

Meinhardt et al. BMC Genomics 2014 15:164   doi:10.1186/1471-2164-15-164

Open Data