Table 2

Evaluation of accuracy and CPU time of iSeeRNA, PhyloCSF, and CPC on comparison dataset

Dataset

Data size

Accuracy (%)

Running Timec


iSeeRNA

CPCb

iSeeRNA

PhyloCSFd

CPC


lincRNAs

2485

96.1

82.9

99.2

19.2s

3270m

278s


PCTs

2432

95.3

92.0

85.2

25.7s

13307m

309s


a PhyloCSF failed to calculate the score for 34 lincRNAs; the accuracy and CPU time were thus calculated based on 2451 lincRNAs.

b Uniref90 was used as the protein database.

c m, minute; s, second.

d To save the running time, we split the comparison dataset and ran PhyloCSF on 20 nodes in parallel. The reported CPU time was the sum of the execution time on all nodes.

Sun et al. BMC Genomics 2013 14(Suppl 2):S7   doi:10.1186/1471-2164-14-S2-S7

Open Data