Table 2

Structure search and comparison of the three novel folds with the structural analogs

New fold

Detected analog

DaliLite

TM-align

GANGSTA+

deconSTRUCT

SSM

ePC


2JMK/7/57

1GO4H/4/93

11.0/0/75

4.0/1/67

1.8/7/61

0/0

1/14

4/100%/8.3

2AJE/7/44

1J7NB/40/738

3.9/3/45

3.4/3/45

2.1/4/53

3/31

3/61

7/100%/10.9

2ES9/5/58

1SXJH/15/267

2.5/4/57

4.0/5/65

1.8/5/69

3/36

2/38

5/100%/9.9


The results for DaliLite, TM-align and GANGSTA+ are from [7]. The format of protein entries: PDB ID/number of SSEs/number of residues in these SSEs. The format of the testing result for DaliLite, TM-align and GANGSTA+: RMSD/number of aligned SSEs/number of aligned residues. The format of the testing results for deconSTRUCT and SSM: no. of matched SSEs/no. of aligned AAs, and for our approach ePC: no. of matched SSEs/CORE-COV/score).

Ashby et al. BMC Genomics 2013 14(Suppl 2):S1   doi:10.1186/1471-2164-14-S2-S1

Open Data