Table 1

The running times and scores for different K values

K =

125

250

500

1000

time

1.90

3.57

6.76

12.73

score

8.89

9.08

9.17

9.28

Note for all these testing our approach use the same parameter r = 6.

Ashby et al. BMC Genomics 2013 14(Suppl 2):S1   doi:10.1186/1471-2164-14-S2-S1