Table 1

Size of the comparison networks

Annotated co-regulation network

Chip-chip co-binding network

similarity matrix of ref [34]

Cis-similarity matrix


Nodes

Edges

Nodes

Edges

Nodes

Nodes


Original size

612

10,599

2,397

178,202

3,146

3,000

Similarity matrix of ref [34]

446

5,816

1,491

77,597

3,146

1,909

Cis-similarity matrix

467

6,554

1,439

73,982

1,909

3,000

Intersect with both

360

3,984

1,006

39,693

1,909

1,909


This table shows the size of the intersections of the networks that are restricted by the nodes (genes names) of the sub-networks. 'Cis-similarity matrix' represents our predicted co-regulatory similarity matrix.

Gao et al. BMC Genomics 2013 14(Suppl 1):S4   doi:10.1186/1471-2164-14-S1-S4

Open Data