Figure 3.

A predicted Saccharomyces cerevisiae cis-regulatory network. It is a whole cis-regulatory network of Saccharomyces cerevisiae predicted by this paper. Starting from the gene vs. motif significance score matrix, S, we use a score cutoff of 17 to produce the cis-regulatory network, R. The green diamonds represent 6-mer motifs and the blue ellipses represent genes. The color and width of the edges show the significance score. The color ranges from light gray to red (while the width ranges from 1 to 7), representing the significance score range from 17 to 126, respectively. The major clusters shown in this figure may have important biological meaning (see Figure 2 and Table 2).

Gao et al. BMC Genomics 2013 14(Suppl 1):S4   doi:10.1186/1471-2164-14-S1-S4