Co-regulatory network based evaluation results. Evaluation result of three models were shown - the reference model developed by Brohée, et al., 2011 (denoted by 'ref '), the naive model with simple k-mer counts (denoted by 'cis, simple ct'), and our main model with both sequence information and gene expression neighborhood information from the gene co-expression network (denoted by 'cis, coexp'). (a) The comparison on the annotated regulon network. (b) The comparison on the Harbison's ChIP-chip based co-binding network.
Gao et al. BMC Genomics 2013 14(Suppl 1):S4 doi:10.1186/1471-2164-14-S1-S4