Deletion detection by paired-end mapping. Paired ends obtained from the donor genome (top) are mapped to the reference genome (bottom). Since the paired ends span a deletion breakpoint in the donor, the mappings are stretched. The deleted part in the reference genome is shown in gray.
Wittler BMC Genomics 2013 14(Suppl 1):S16 doi:10.1186/1471-2164-14-S1-S16