Open Access Research article

Global analyses of Ceratocystis cacaofunesta mitochondria: from genome to proteome

Alinne Batista Ambrosio1, Leandro Costa do Nascimento1, Bruno V Oliveira1, Paulo José P L Teixeira1, Ricardo A Tiburcio1, Daniela P Toledo Thomazella1, Adriana F P Leme2, Marcelo F Carazzolle13, Ramon O Vidal12, Piotr Mieczkowski4, Lyndel W Meinhardt5, Gonçalo A G Pereira1* and Odalys G Cabrera1

Author Affiliations

1 Laboratório de Genômica e Expressão, Departamento de Genética Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas, CEP: 13083-970, Campinas, São Paulo, Brasil

2 Laboratório Nacional de Biociências-LNBio, Centro Nacional de Pesquisa em Energia e Materiais, CEP: 13083-970, Campinas, São Paulo, Brasil

3 Centro Nacional de Processamento de Alto Desempenho, Universidade Estadual de Campinas, CEP: 13083-970, Campinas, São Paulo, Brasil

4 High-Throughput Sequencing Facility, University of North Carolina, 2234 Nelson Highway, Chapel Hill, NC, NC 27516, USA

5 Sustainable Perennial Crops Laboratory, USDA/ARS, 10300 Baltimore Ave, Beltsville, MD, 20705, USA

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BMC Genomics 2013, 14:91  doi:10.1186/1471-2164-14-91

Published: 11 February 2013

Additional files

Additional file 1:

All intronic ORFs sequences.

Format: XLSX Size: 15KB Download file

Open Data

Additional file 2:

Table of all genes predicted in this work and its RPKMs and its annotations (RPKMs, NR, KEGG, CDD, Autofact, Biological process, Molecular function and Cellular component, Predicted by BlastP, Predicted by TargetP/WolfpSort, Identified by LC-MS/MS). Sheet 2A: mitochondrial genes. Sheet 2B: predicted nuclear genes.

Format: XLSX Size: 329KB Download file

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Additional file 3:

Scheme of experimental method.

Format: PNG Size: 189KB Download file

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Additional file 4:

Table of all LC-MS/MS.data. Sheet 4A: all proteins identified by LC-MS/MS. Sheet 4B: new annotation proposed to hypothetical proteins. Sheet 4C: possible cellular location of proteins not predicted.

Format: XLSX Size: 71KB Download file

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Additional file 5:

Table grouping of biological process categories identified by GOslim.

Format: XLSX Size: 14KB Download file

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Additional file 6:

Table of mitochondrial predicted genes annotation by GOslim.

Format: XLSX Size: 290KB Download file

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Additional file 7:

Amino acid sequences of fungal mitochondrial proteins.

Format: TXT Size: 729KB Download file

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Additional file 8:

Amino acid sequences of all proteins analyzed in this work.

Format: TXT Size: 550KB Download file

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Additional file 9:

Table mzML of mass spectrometry data.

Format: MZID Size: 1.7MB Download file

Open Data