Open Access Research article

The neuropeptide complement of the marine annelid Platynereis dumerilii

Markus Conzelmann1*, Elizabeth A Williams1, Karsten Krug2, Mirita Franz-Wachtel2, Boris Macek2 and Gáspár Jékely1*

Author Affiliations

1 Max Planck Institute for Developmental Biology, Spemannstrasse 35, 72076, Tübingen, Germany

2 Proteome Center Tübingen, University of Tübingen, Auf der Morgenstelle 15, 72076, Tübingen, Germany

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BMC Genomics 2013, 14:906  doi:10.1186/1471-2164-14-906

Published: 20 December 2013

Additional files

Additional file 1:

Platynereis transcriptome assembly, part 1 in GenBank format (txt). The file was compressed with tar -jcvf archive_name.tar.bz2 file_to_compress, use tar –jxvf to uncompress it. Contains 85,000 sequences.

Format: ZIP Size: 18.8MB Download file

Open Data

Additional file 2:

Platynereis transcriptome assembly, part 2 in GenBank format (txt). The file was compressed with tar -jcvf archive_name.tar.bz2 file_to_compress, use tar –jxvf to uncompress it. Contains 85,000 sequences.

Format: ZIP Size: 15.4MB Download file

Open Data

Additional file 3:

Platynereis transcriptome assembly, part 3 in GenBank format (txt). The file was compressed with tar -jcvf archive_name.tar.bz2 file_to_compress, use tar –jxvf to uncompress it. Contains 85,000 sequences.

Format: ZIP Size: 12.2MB Download file

Open Data

Additional file 4:

Platynereis transcriptome assembly, part 4 in GenBank format (txt). The file was compressed with tar -jcvf archive_name.tar.bz2 file_to_compress, use tar –jxvf to uncompress it. Contains 96,626 sequences.

Format: ZIP Size: 15.2MB Download file

Open Data

Additional file 5:

Platynereis predicted proteins in FASTA format (txt). The file was compressed with tar -jcvf archive_name.tar.bz2 file_to_compress, use tar –jxvf to uncompress it. Contains 51,767 sequences.

Format: ZIP Size: 8.1MB Download file

Open Data

Additional file 6:

Platynereis predicted secreted proteins in FASTA format (txt). The SP was removed from the sequences to facilitate the matching of MS hits. Contains 11,075 sequences.

Format: TXT Size: 1.9MB Download file

Open Data

Additional file 7:

Platynereis pNPs in FASTA format (txt). Contains 104 sequences.

Format: TXT Size: 25KB Download file

Open Data

Additional file 8:

Precursor structures and peptide logos for repetitive motifs for all Platynereis pNPs, in portable document format.

Format: PDF Size: 430KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 9:

Mass-spectrometry hits obtained by the analysis of Platynereis peptide extracts with the corresponding spectra for each hit, in portable document format.

Format: PDF Size: 1.3MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 10:

Comprehensive list of multiple sequence alignments of Platynereis pNPs with homologous sequences, in portable document format.

Format: PDF Size: 6.8MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 11:

Normalized Illumina RNA-sequencing read counts for 98 Platynereis pNPs in 13 different life-cycle stages, as excel spreadsheet.

Format: XLSX Size: 25KB Download file

Open Data